count: - kill -p [DONE] - change -o to output file [DONE] - make -o required [DONE] - add argument: <-e | -p num_hash_bits> query: - make -o optional (default to stdout) - make -q optional (default to stdin) inner_prod: - remove -a -b [DONE] list: - make -o optional (default to stdout) - add a cutoff parameter new command: merge merge <-e | -p num_hash_bits> [-c cutoff] [-n] -o ... new command: filter (same as merge, but only one input -- internally just runs merge) new command: info [DONE] info - outputs: - kmer size - version - exactness or num hash bits - number of kmers - number of distinct kmers - cutoff - whether counts are present - etc? make squeakrconfig packed [DONE]