https://github.com/morgankain/RRV_HostVectorCompetence
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Tip revision: be7e87c3c4c8af0420a8dd42cdcff5586fdbad90 authored by Morgan Kain on 25 May 2021, 16:23 UTC
Merge pull request #1 from morgankain/add-license-1
Tip revision: be7e87c
6_real_data.R
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### Fit models to empirical data from the RRV system to be used in the NGM model ###
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## The scripts here are used to create the following data frames which are used to predict
## community R0 and host/vector competence
####

# h_to_m_trans      : host to mosquito transmission for the community of interest
# m_to_h_trans      : mosquito to host transmission
# mos_surv_for_R0   : mosquito survival
# mosq_bite_pref    : mosquito biting preference given the host community
# host_prop_for_R0  : proportions of each host in the given community

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## Host titer
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source("7_data.titer.R")

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## Host to mosquito transmission
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source("8_data.hm.R")

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## Mosquito to host transmission
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source("9_data.mh.R")

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## Mosquito survival.
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source("11_data.mosq_surv_same.R")

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## Mosquito biting preference
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source("12_data.mosq_bite_pref.R")

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## Mosquito biting rate
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## Just treat biting rate as the same across all hosts for now. When set up this way,
 ## just adjust the desired parameter value in parameters.R
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