test_that("Consistency of Poisson likelihoods", { p <- 13 rand_pois <- rpois(100, lambda = p) nl_pois <- nlogL_pois(rand_pois, p) expect_equal(nl_pois, nlogL_zipois(rand_pois, c(0, p))) expect_equal(nl_pois, nlogL_pois2(rand_pois, c(1, p, 10))) expect_equal(nl_pois, nlogL_pois2(rand_pois, c(0, 10, p))) expect_equal(nl_pois, nlogL_zipois2(rand_pois, c(0, 1, p, 10))) expect_equal(nl_pois, nlogL_zipois2(rand_pois, c(0, 0, 10, p))) }) test_that("Consistency of Negative-Binomial likelihoods", { p <- c(7, 13) rand_nb <- rnbinom(100, size = p[1], mu = p[2]) nl_nb <- nlogL_nb(rand_nb, p) expect_equal(nl_nb, nlogL_zinb(rand_nb, c(0, p))) expect_equal(nl_nb, nlogL_nb2(rand_nb, c(1, p, 11, 19))) expect_equal(nl_nb, nlogL_nb2(rand_nb, c(0, 11, 19, p))) expect_equal(nl_nb, nlogL_zinb2(rand_nb, c(0, 1, p, 11, 19))) expect_equal(nl_nb, nlogL_zinb2(rand_nb, c(0, 0, 11, 19, p))) }) test_that("Consistency of Poisson-Beta likelihoods", { p <- c(5,7,13) rand_pb <- rpb(100, p[1], p[2], p[3]) nl_pb <- nlogL_pb(rand_pb, p) expect_equal(nl_pb, nlogL_zipb(rand_pb, c(0, p))) expect_equal(nl_pb, nlogL_pb2(rand_pb, c(1, p, 11, 19, 23))) expect_equal(nl_pb, nlogL_pb2(rand_pb, c(0, 11, 19, 23, p))) expect_equal(nl_pb, nlogL_zipb2(rand_pb, c(0, 1, p, 11, 19, 23))) expect_equal(nl_pb, nlogL_zipb2(rand_pb, c(0, 0, 11, 19, 23, p))) })