slope_strata_v2.R
slopes_mat[SpeciesMat$MammalNumberHorvath=="10.1.3" & SpeciesMat$Tissue =="Skin", 11:13] =
NA
slopes_mat[SpeciesMat$MammalNumberHorvath=="8.7.9", 1] =
2*slopes_mat[SpeciesMat$MammalNumberHorvath=="8.7.9", 2]
slopes_mat[SpeciesMat$MammalNumberHorvath=="8.7.10",11] = NA
slopes_mat[SpeciesMat$MammalNumberHorvath=="8.7.4",11] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="8.7.4",12]
slopes_mat[SpeciesMat$MammalNumberHorvath=="8.9.1",2] = NA
slopes_mat[SpeciesMat$MammalNumberHorvath=="5.5.1",13] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="5.5.1",11]
slopes_mat[SpeciesMat$MammalNumberHorvath=="9.9.1" & SpeciesMat$Tissue =="SVZ",12:13] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="9.9.1" & SpeciesMat$Tissue =="SVZ",11]
slopes_mat[SpeciesMat$MammalNumberHorvath=="8.7.8", 1] = NA
if(len1 == "BivProm1+") {
slopes_mat[SpeciesMat$MammalNumberHorvath=="9.5.10", 1] = NA
slopes_mat[SpeciesMat$MammalNumberHorvath=="2.1.1", 1] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="2.1.1", 2]*2
slopes_mat[SpeciesMat$MammalNumberHorvath=="1.4.2", 1] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="1.4.2", 2]*2
slopes_mat[SpeciesMat$MammalNumberHorvath=="17.1.3", 1] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="17.1.3", 2]*2
}
if(len1 == "BivProm2+") {
slopes_mat[SpeciesMat$MammalNumberHorvath=="8.5.6", 1] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="8.5.6", 2]*2
slopes_mat[SpeciesMat$MammalNumberHorvath=="8.17.2", 1] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="8.17.2", 2] = NA
slopes_mat[SpeciesMat$MammalNumberHorvath=="5.2.1", 1:2] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="5.2.1", 3] *2
slopes_mat[SpeciesMat$MammalNumberHorvath=="9.9.1" & SpeciesMat$Tissue =="Kidney",11] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="9.9.1" & SpeciesMat$Tissue =="Kidney",12]
slopes_mat[SpeciesMat$MammalNumberHorvath=="9.9.21"&
SpeciesMat$Tissue=="Liver", 12:13 ] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="9.9.21"&
SpeciesMat$Tissue=="Liver", 11 ]
slopes_mat[SpeciesMat$MammalNumberHorvath=="21.2.1", 1:2] = NA
slopes_mat[SpeciesMat$MammalNumberHorvath=="11.1.3", 1] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="11.1.3", 2]
slopes_mat[SpeciesMat$MammalNumberHorvath %in% c("1.3.3","1.3.9") , 11:13] = NA
slopes_mat[SpeciesMat$MammalNumberHorvath=="1.2.3" &
SpeciesMat$Tissue=="Blood&Skin", 11:13] = NA
slopes_mat[SpeciesMat$MammalNumberHorvath=="6.1.2", 11:13] = NA
slopes_mat[SpeciesMat$MammalNumberHorvath %in% c("4.13.3","4.13.10"), 11:13] = NA
#Lagenorhynchus obliquidens
slopes_mat[SpeciesMat$MammalNumberHorvath=="4.13.4" & SpeciesMat$Tissue=="Blood", 1] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="4.13.4" & SpeciesMat$Tissue=="Blood", 2]*2
slopes_mat[SpeciesMat$MammalNumberHorvath=="1.1.1" & SpeciesMat$Tissue=="Skin", 1:3] = NA
slopes_mat[SpeciesMat$MammalNumberHorvath=="1.1.1" & SpeciesMat$Tissue=="Blood", 1] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="1.1.1" & SpeciesMat$Tissue=="Blood", 2]*2
}
if(len1 == "ReprPC1+") {
slopes_mat[SpeciesMat$MammalNumberHorvath=="4.13.4" & SpeciesMat$Tissue=="Blood", 1] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="4.13.4" & SpeciesMat$Tissue=="Blood", 2]*2
slopes_mat[SpeciesMat$MammalNumberHorvath=="9.1.3" & SpeciesMat$Tissue=="Liver", 1] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="9.1.3" & SpeciesMat$Tissue=="Liver", 2]*2
}
if(len1 == "BivProm3+") {
slopes_mat[SpeciesMat$MammalNumberHorvath=="9.9.3" & SpeciesMat$Tissue =="Brain",
c(1:6, 11:13)] = NA
slopes_mat[SpeciesMat$MammalNumberHorvath=="9.9.3" & SpeciesMat$Tissue =="Liver", 1] =
slopes_mat[SpeciesMat$MammalNumberHorvath=="9.9.3" & SpeciesMat$Tissue =="Liver", 2]
}