https://doi.org/10.5281/zenodo.10843109
CITATION.cff
# -----------------------------------------------------------
# CITATION file created with {cffr} R package, v0.2.2
# See also: https://docs.ropensci.org/cffr/
# -----------------------------------------------------------
cff-version: 1.2.0
message: 'To cite package "bioregion" in publications use:'
type: software
license: GPL-3.0-only
title: 'bioregion: Bioregionalisation Methods in R'
version: 0.1.0
abstract: bioregion provides multiple methods to delineate bioregions. Use methods based
on projected or bipartite networks.
authors:
- family-names: Denelle
given-names: Pierre
email: pierre.denelle@gmail.com
orcid: https://orcid.org/0000-0001-5037-2281
- family-names: Lenormand
given-names: Maxime
email: maxime.lenormand@inrae.fr
orcid: https://orcid.org/0000-0001-6362-3473
- family-names: Leroy
given-names: Boris
email: boris.leroy@gmail.com
orcid: https://orcid.org/0000-0002-7686-4302
preferred-citation:
type: manual
title: 'bioregion: Bioregionalisation Methods in R'
authors:
- family-names: Denelle
given-names: Pierre
email: pierre.denelle@gmail.com
orcid: https://orcid.org/0000-0001-5037-2281
- family-names: Lenormand
given-names: Maxime
email: maxime.lenormand@inrae.fr
orcid: https://orcid.org/0000-0001-6362-3473
- family-names: Leroy
given-names: Boris
email: boris.leroy@gmail.com
orcid: https://orcid.org/0000-0002-7686-4302
version: 0.1.0
abstract: bioregion provides multiple methods to delineate bioregions. Use methods
based on projected or bipartite networks.
repository-code: https://github.com/bioRgeo/bioregion
url: https://github.com/bioRgeo/bioregion
contact:
- family-names: Lenormand
given-names: Maxime
email: maxime.lenormand@inrae.fr
orcid: https://orcid.org/0000-0001-6362-3473
license: GPL-3.0-only
year: '2022'
repository-code: https://github.com/bioRgeo/bioregion
url: https://github.com/bioRgeo/bioregion
contact:
- family-names: Lenormand
given-names: Maxime
email: maxime.lenormand@inrae.fr
orcid: https://orcid.org/0000-0001-6362-3473
references:
- type: software
title: 'R: A Language and Environment for Statistical Computing'
notes: Depends
authors:
- name: R Core Team
location:
name: Vienna, Austria
year: '2022'
url: https://www.R-project.org/
institution:
name: R Foundation for Statistical Computing
version: '>= 4.0.0'
- type: software
title: ape
abstract: 'ape: Analyses of Phylogenetics and Evolution'
notes: Imports
authors:
- family-names: Paradis
given-names: Emmanuel
email: Emmanuel.Paradis@ird.fr
orcid: https://orcid.org/0000-0003-3092-2199
- family-names: Blomberg
given-names: Simon
orcid: https://orcid.org/0000-0003-1062-0839
- family-names: Bolker
given-names: Ben
orcid: https://orcid.org/0000-0002-2127-0443
- family-names: Brown
given-names: Joseph
orcid: https://orcid.org/0000-0002-3835-8062
- family-names: Claramunt
given-names: Santiago
orcid: https://orcid.org/0000-0002-8926-5974
- family-names: Claude
given-names: Julien
orcid: https://orcid.org/0000-0002-9267-1228
- family-names: Cuong
given-names: Hoa Sien
- family-names: Desper
given-names: Richard
- family-names: Didier
given-names: Gilles
orcid: https://orcid.org/0000-0003-0596-9112
- family-names: Durand
given-names: Benoit
- family-names: Dutheil
given-names: Julien
orcid: https://orcid.org/0000-0001-7753-4121
- family-names: Ewing
given-names: RJ
- family-names: Gascuel
given-names: Olivier
- family-names: Guillerme
given-names: Thomas
orcid: https://orcid.org/0000-0003-4325-1275
- family-names: Heibl
given-names: Christoph
orcid: https://orcid.org/0000-0002-7655-3299
- family-names: Ives
given-names: Anthony
orcid: https://orcid.org/0000-0001-9375-9523
- family-names: Jones
given-names: Bradley
orcid: https://orcid.org/0000-0003-4498-1069
- family-names: Krah
given-names: Franz
orcid: https://orcid.org/0000-0001-7866-7508
- family-names: Lawson
given-names: Daniel
orcid: https://orcid.org/0000-0002-5311-6213
- family-names: Lefort
given-names: Vincent
- family-names: Legendre
given-names: Pierre
orcid: https://orcid.org/0000-0002-3838-3305
- family-names: Lemon
given-names: Jim
- family-names: Louvel
given-names: Guillaume
orcid: https://orcid.org/0000-0002-7745-0785
- family-names: Marcon
given-names: Eric
orcid: https://orcid.org/0000-0002-5249-321X
- family-names: McCloskey
given-names: Rosemary
orcid: https://orcid.org/0000-0002-9772-8553
- family-names: Nylander
given-names: Johan
- family-names: Opgen-Rhein
given-names: Rainer
- family-names: Popescu
given-names: Andrei-Alin
- family-names: Royer-Carenzi
given-names: Manuela
- family-names: Schliep
given-names: Klaus
orcid: https://orcid.org/0000-0003-2941-0161
- family-names: Strimmer
given-names: Korbinian
orcid: https://orcid.org/0000-0001-7917-2056
- family-names: de Vienne
given-names: Damien
orcid: https://orcid.org/0000-0001-9532-5251
year: '2022'
url: https://CRAN.R-project.org/package=ape
- type: software
title: bipartite
abstract: 'bipartite: Visualising Bipartite Networks and Calculating Some (Ecological)
Indices'
notes: Imports
authors:
- family-names: Dormann
given-names: Carsten F.
- family-names: Fruend
given-names: Jochen
- family-names: Gruber
given-names: Bernd
- family-names: Beckett
given-names: with additional code from Stephen
- family-names: Devoto
given-names: Mariano
- family-names: Felix
given-names: Gabriel
- family-names: Iriondo
given-names: Jose
- family-names: Opsahl
given-names: Tove
- family-names: Pinheiro
given-names: Rafael
- family-names: Strauss
given-names: Rouven
- family-names: Vazquez
given-names: Diego
- family-names: Bluethgen
given-names: also based on C-code developed by Nils
- family-names: Strauss
given-names: Aaron Clauset/Rouven
- family-names: Rodriguez-Girones
given-names: Miguel
year: '2022'
url: https://CRAN.R-project.org/package=bipartite
- type: software
title: cluster
abstract: 'cluster: "Finding Groups in Data": Cluster Analysis Extended Rousseeuw
et al.'
notes: Imports
authors:
- family-names: Maechler
given-names: Martin
email: maechler@stat.math.ethz.ch
orcid: https://orcid.org/0000-0002-8685-9910
- family-names: Rousseeuw
given-names: Peter
email: peter.rousseeuw@kuleuven.be
orcid: https://orcid.org/0000-0002-3807-5353
- family-names: Struyf
given-names: Anja
- family-names: Hubert
given-names: Mia
email: Mia.Hubert@uia.ua.ac.be
orcid: https://orcid.org/0000-0001-6398-4850
year: '2022'
url: https://CRAN.R-project.org/package=cluster
- type: software
title: dbscan
abstract: 'dbscan: Density-Based Spatial Clustering of Applications with Noise (DBSCAN)
and Related Algorithms'
notes: Imports
authors:
- family-names: Hahsler
given-names: Michael
email: mhahsler@lyle.smu.edu
- family-names: Piekenbrock
given-names: Matthew
year: '2022'
url: https://CRAN.R-project.org/package=dbscan
- type: software
title: dendextend
abstract: 'dendextend: Extending ''dendrogram'' Functionality in R'
notes: Imports
authors:
- family-names: Galili
given-names: Tal
email: tal.galili@gmail.com
- family-names: Jefferis
given-names: Gregory
email: jefferis@gmail.com
year: '2022'
url: https://CRAN.R-project.org/package=dendextend
- type: software
title: dynamicTreeCut
abstract: 'dynamicTreeCut: Methods for Detection of Clusters in Hierarchical Clustering
Dendrograms'
notes: Imports
authors:
- family-names: Langfelder
given-names: Peter
email: Peter.Langfelder@gmail.com
- family-names: Zhang
given-names: Bin
email: binzhang.ucla@gmail.com
- family-names: Horvath
given-names: with contributions from Steve
email: SHorvath@mednet.ucla.edu
year: '2022'
url: https://CRAN.R-project.org/package=dynamicTreeCut
- type: software
title: earth
abstract: 'earth: Multivariate Adaptive Regression Splines'
notes: Imports
authors:
- family-names: Hastie
given-names: Stephen Milborrow. Derived from mda:mars by Trevor
- family-names: wrapper.
given-names: Rob Tibshirani. Uses Alan Miller's Fortran utilities with Thomas
Lumley's leaps
year: '2022'
url: https://CRAN.R-project.org/package=earth
- type: software
title: fastcluster
abstract: 'fastcluster: Fast Hierarchical Clustering Routines for R and ''Python'''
notes: Imports
authors:
- family-names: Müllner
given-names: Daniel
email: daniel@danifold.net
year: '2022'
url: https://CRAN.R-project.org/package=fastcluster
- type: software
title: ggplot2
abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
notes: Imports
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@rstudio.com
orcid: https://orcid.org/0000-0003-4757-117X
- family-names: Chang
given-names: Winston
orcid: https://orcid.org/0000-0002-1576-2126
- family-names: Henry
given-names: Lionel
- family-names: Pedersen
given-names: Thomas Lin
email: thomas.pedersen@rstudio.com
orcid: https://orcid.org/0000-0002-5147-4711
- family-names: Takahashi
given-names: Kohske
- family-names: Wilke
given-names: Claus
orcid: https://orcid.org/0000-0002-7470-9261
- family-names: Woo
given-names: Kara
orcid: https://orcid.org/0000-0002-5125-4188
- family-names: Yutani
given-names: Hiroaki
orcid: https://orcid.org/0000-0002-3385-7233
- family-names: Dunnington
given-names: Dewey
orcid: https://orcid.org/0000-0002-9415-4582
year: '2022'
url: https://CRAN.R-project.org/package=ggplot2
- type: software
title: igraph
abstract: 'igraph: Network Analysis and Visualization'
notes: Imports
authors:
- family-names: file.
given-names: See AUTHORS
year: '2022'
url: https://CRAN.R-project.org/package=igraph
- type: software
title: MASS
abstract: 'MASS: Support Functions and Datasets for Venables and Ripley''s MASS'
notes: Imports
authors:
- family-names: Ripley
given-names: Brian
email: ripley@stats.ox.ac.uk
year: '2022'
url: https://CRAN.R-project.org/package=MASS
- type: software
title: mathjaxr
abstract: 'mathjaxr: Using ''Mathjax'' in Rd Files'
notes: Imports
authors:
- family-names: Viechtbauer
given-names: Wolfgang
email: wvb@wvbauer.com
orcid: https://orcid.org/0000-0003-3463-4063
year: '2022'
url: https://CRAN.R-project.org/package=mathjaxr
- type: software
title: Matrix
abstract: 'Matrix: Sparse and Dense Matrix Classes and Methods'
notes: Imports
authors:
- family-names: Bates
given-names: Douglas
- family-names: Maechler
given-names: Martin
email: mmaechler+Matrix@gmail.com
orcid: https://orcid.org/0000-0002-8685-9910
- family-names: Jagan
given-names: Mikael
year: '2022'
url: https://CRAN.R-project.org/package=Matrix
- type: software
title: mclust
abstract: 'mclust: Gaussian Mixture Modelling for Model-Based Clustering, Classification,
and Density Estimation'
notes: Imports
authors:
- family-names: Fraley
given-names: Chris
- family-names: Raftery
given-names: Adrian E.
orcid: https://orcid.org/0000-0002-6589-301X
- family-names: Scrucca
given-names: Luca
email: luca.scrucca@unipg.it
orcid: https://orcid.org/0000-0003-3826-0484
year: '2022'
url: https://CRAN.R-project.org/package=mclust
- type: software
title: Rcpp
abstract: 'Rcpp: Seamless R and C++ Integration'
notes: Imports
authors:
- family-names: Eddelbuettel
given-names: Dirk
- family-names: Francois
given-names: Romain
- family-names: Allaire
given-names: JJ
- family-names: Ushey
given-names: Kevin
- family-names: Kou
given-names: Qiang
- family-names: Russell
given-names: Nathan
- family-names: Ucar
given-names: Inaki
- family-names: Bates
given-names: Douglas
- family-names: Chambers
given-names: John
year: '2022'
url: https://CRAN.R-project.org/package=Rcpp
- type: software
title: Rdpack
abstract: 'Rdpack: Update and Manipulate Rd Documentation Objects'
notes: Imports
authors:
- family-names: Boshnakov
given-names: Georgi N.
email: georgi.boshnakov@manchester.ac.uk
year: '2022'
url: https://CRAN.R-project.org/package=Rdpack
- type: software
title: reshape2
abstract: 'reshape2: Flexibly Reshape Data: A Reboot of the Reshape Package'
notes: Imports
authors:
- family-names: Wickham
given-names: Hadley
email: h.wickham@gmail.com
year: '2022'
url: https://CRAN.R-project.org/package=reshape2
- type: software
title: rmarkdown
abstract: 'rmarkdown: Dynamic Documents for R'
notes: Imports
authors:
- family-names: Allaire
given-names: JJ
email: jj@rstudio.com
- family-names: Xie
given-names: Yihui
email: xie@yihui.name
orcid: https://orcid.org/0000-0003-0645-5666
- family-names: McPherson
given-names: Jonathan
email: jonathan@rstudio.com
- family-names: Luraschi
given-names: Javier
email: javier@rstudio.com
- family-names: Ushey
given-names: Kevin
email: kevin@rstudio.com
- family-names: Atkins
given-names: Aron
email: aron@rstudio.com
- family-names: Wickham
given-names: Hadley
email: hadley@rstudio.com
- family-names: Cheng
given-names: Joe
email: joe@rstudio.com
- family-names: Chang
given-names: Winston
email: winston@rstudio.com
- family-names: Iannone
given-names: Richard
email: rich@rstudio.com
orcid: https://orcid.org/0000-0003-3925-190X
year: '2022'
url: https://CRAN.R-project.org/package=rmarkdown
- type: software
title: stats
abstract: 'R: A Language and Environment for Statistical Computing'
notes: Imports
authors:
- name: R Core Team
location:
name: Vienna, Austria
year: '2022'
url: https://www.R-project.org/
institution:
name: R Foundation for Statistical Computing
- type: software
title: tidyr
abstract: 'tidyr: Tidy Messy Data'
notes: Imports
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@rstudio.com
- family-names: Girlich
given-names: Maximilian
year: '2022'
url: https://CRAN.R-project.org/package=tidyr
- type: software
title: utils
abstract: 'R: A Language and Environment for Statistical Computing'
notes: Imports
authors:
- name: R Core Team
location:
name: Vienna, Austria
year: '2022'
url: https://www.R-project.org/
institution:
name: R Foundation for Statistical Computing
- type: software
title: knitr
abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
notes: Suggests
authors:
- family-names: Xie
given-names: Yihui
email: xie@yihui.name
orcid: https://orcid.org/0000-0003-0645-5666
year: '2022'
url: https://CRAN.R-project.org/package=knitr
