Skip to main content
  • Home
  • Development
  • Documentation
  • Donate
  • Operational login
  • Browse the archive

swh logo
SoftwareHeritage
Software
Heritage
Archive
Features
  • Search

  • Downloads

  • Save code now

  • Add forge now

  • Help

  • e14bfb7
  • /
  • install-sibelia.py
Raw File Download
Permalinks

To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

  • content
  • directory
content badge Iframe embedding
swh:1:cnt:71e66050e690c62673307ecf8006d7cf94525224
directory badge Iframe embedding
swh:1:dir:e14bfb74db354a39ac70ed5bd7a4e18d6dcc5fde
Citations

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

  • content
  • directory
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
install-sibelia.py
#!/usr/bin/env python

"""
A script which installs Sibelia
"""

from __future__ import print_function
import sys, os
import subprocess
import shutil
import argparse
try:
    from urllib import urlretrieve
except ImportError:
    from urllib.request import urlretrieve

SIBELIA_LINK = "https://github.com/bioinf/Sibelia/archive/master.tar.gz"
DEFAULT_PREFIX = "lib"

def install_deps(prefix):
    if which("Sibelia"):
        print("Sibelia is already installed", file=sys.stderr)
        return True
    else:
        print("Installing Sibelia", file=sys.stderr)
        try:
            return install_sibelia(prefix)
        except OSError as e:
            print("Error while installing - exiting", file=sys.stderr)
            print(e, file=sys.stderr)
            return False


def install_sibelia(prefix):
    if not test_tools():
        return False

    initial_dir = os.getcwd()

    tmp_dir = os.path.join(initial_dir, "sibelia-build")
    if os.path.isdir(tmp_dir):
        shutil.rmtree(tmp_dir)
    os.mkdir(tmp_dir)
    os.chdir(tmp_dir)

    print("Downloading source...", file=sys.stderr)
    urlretrieve(SIBELIA_LINK, "master.tar.gz")
    subprocess.check_call(["tar", "-xf", "master.tar.gz"])

    os.chdir("Sibelia-master/build")

    srcdir = os.path.join("..", "src")
    subprocess.check_call(["cmake", srcdir, "-DONLY_SIBELIA=1",
                            "-DCMAKE_INSTALL_PREFIX=" + tmp_dir])
    subprocess.check_call(["make"])
    subprocess.check_call(["make", "install"])

    sibelia_bin_src = os.path.join(tmp_dir, "bin", "Sibelia")
    sibelia_bin_dst = os.path.join(initial_dir, prefix, "Sibelia")
    shutil.copy(sibelia_bin_src, sibelia_bin_dst)

    os.chdir(initial_dir)
    shutil.rmtree(tmp_dir)

    return True


#Mimics UNIX "which" command
def which(program):
    def is_exe(fpath):
        return os.path.isfile(fpath) and os.access(fpath, os.X_OK)

    fpath, fname = os.path.split(program)
    if fpath:
        if is_exe(program):
            return program
    else:
        for path in os.environ["PATH"].split(os.pathsep):
            path = path.strip('"')
            exe_file = os.path.join(path, program)
            if is_exe(exe_file):
                return exe_file

    return None


def test_tools():
    for tool in ["cmake", "make", "tar"]:
        if not which(tool):
            print("ERROR: building Sibelia requires " + tool, file=sys.stderr)
            return False
    return True


def main():
    parser = argparse.ArgumentParser(description="A helper script for "
                                                 "Sibelia installation")
    parser.add_argument("--prefix", dest="prefix",
                        help="installation prefix (default = \"{0}\")"
                        .format(DEFAULT_PREFIX),
                        default=DEFAULT_PREFIX)
    args = parser.parse_args()
    return int(not install_deps(args.prefix))


if __name__ == "__main__":
    sys.exit(main())

Software Heritage — Copyright (C) 2015–2025, The Software Heritage developers. License: GNU AGPLv3+.
The source code of Software Heritage itself is available on our development forge.
The source code files archived by Software Heritage are available under their own copyright and licenses.
Terms of use: Archive access, API— Contact— JavaScript license information— Web API

back to top