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https://github.com/cran/cutpointr
12 May 2022, 17:57:39 UTC
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Tip revision: 7e56c827a694247d212e9a0167a119f917e1f31b authored by Christian Thiele on 31 August 2018, 15:50:10 UTC
version 0.7.4
Tip revision: 7e56c82
add_metric.R
#' Add metrics to a cutpointr object
#'
#' By default, the output of cutpointr includes the optimized metric and several
#' other metrics. This function adds further metrics. Suitable metric functions
#' are all metric functions that are included in the package or that comply
#' with those standards.
#'
#' @param object A cutpointr object.
#' @param metric (list) A list of metric functions to be added.
#' @return A cutpointr object (a data.frame) with one or more added columns.
#' @examples
#' library(dplyr)
#' library(cutpointr)
#' cutpointr(suicide, dsi, suicide, gender) %>%
#'   add_metric(list(ppv, npv)) %>%
#'   select(optimal_cutpoint, subgroup, AUC, sum_sens_spec, ppv, npv)
#' @export
#' @family main cutpointr functions
#' @importFrom rlang !! :=
add_metric <- function(object, metric) {
    if (!is.list(metric)) stop("The metric function(s) must be given as a list.")
    stopifnot("cutpointr" %in% class(object))
    met <- purrr::map(metric, function(metric_func) {
        if (!is.function(metric_func)) {
            stop("The list elements of metric have to be functions.")
        }
        # Get numbers of TP, FP, TN, FN at optimal cutpoint(s) from ROC curve(s)
        # and calculate the metric(s). Allow for type instability of the metric func:
        purrr::pmap_df(list(object$optimal_cutpoint,
                            object$roc_curve,
                            object$direction),
                       function(optimal_cutpoint, roc_curve, direction) {
                           opt_ind <- get_opt_ind(roc_curve = roc_curve,
                                                  oc = optimal_cutpoint,
                                                  direction = direction)
                           met <- metric_func(tp = roc_curve$tp[opt_ind],
                                              fp = roc_curve$fp[opt_ind],
                                              tn = roc_curve$tn[opt_ind],
                                              fn = roc_curve$fn[opt_ind])
                           met_name <- colnames(met)
                           if (length(met_name) > 1) {
                               stop("The metric function should return one column or a vector.")
                           }
                           if (is.null(met_name)) met_name <- "added_metric"
                           if (length(met) > 1) {
                               met <- list(as.numeric(unlist(met)))
                           } else {
                               met <- as.numeric(met)
                           }
                           tibble::tibble(!!met_name := met)
                       })
    })
    oc <- dplyr::bind_cols(object, met)
    return(oc)
}

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