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To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

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swh:1:cnt:72d192c18902f5233086cb4f48fbc8c3fe7815bf
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swh:1:dir:b4f135b203230666f5e14abbaf58604b20e67ee4

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

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Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Checkboxhm.R
#' ### Author: Franck Soubès
#' ### Bioinformatics Master Degree - University of Bordeaux, France
#' ### Link: https://github.com/GeT-TRiX/MA_Trix_App/
#' ### Where: GET-TRiX's facility
#' ### Application: MATRiX is a shiny application for Mining and functional Analysis of TRanscriptomics data
#' ### Licence: GPL-3.0
#' 
#' 
#' #############################################################################
#' ######## align group name in the pannel if there is more than 6 groups      #
#' #############################################################################

selected_test <- callModule(boxChooser, "selcomphm", label = "Choose your comparison", data = reactive(colnames(subsetstat()[[1]])) , group = csvf, case = 2 , empty =T )
subsetgroup_hm <- callModule(boxChooser, "selgrouphm", label = "Choose your group to visualize", data = reactive(levels(csvf()[[2]]$Grp)), group = csvf, case = 1 )


#' subsetwset is a reactive function that aim is to select specific individuals in the data frame
#'
#' @param csvf Data frame corresponding to the Workingset
#' @param subsetgroup_hm a reactive factor with the corresponding groups selected
#'
#' @return subsetwset a reactive data frame with specific columns depending on the user's choices
#'
#' @export


subsetwset <- reactive({
  req(csvf())
  select(csvf()[[1]], as.character(factor(subsetgroup_hm()$X)))
})

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