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<meta name="author" content="Alexander Lalejini, Emily Dolson, Anya E. Vostinar, and Luis Zaman" />
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<li><a href="./">Supplemental material</a></li>
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<li class="chapter" data-level="1" data-path="index.html"><a href="index.html"><i class="fa fa-check"></i><b>1</b> Introduction</a><ul>
<li class="chapter" data-level="1.1" data-path="index.html"><a href="index.html#about-this-supplemental-material"><i class="fa fa-check"></i><b>1.1</b> About this supplemental material</a><ul>
<li class="chapter" data-level="1.1.1" data-path="index.html"><a href="index.html#contents"><i class="fa fa-check"></i><b>1.1.1</b> Contents</a></li>
</ul></li>
<li class="chapter" data-level="1.2" data-path="index.html"><a href="index.html#contributing-authors"><i class="fa fa-check"></i><b>1.2</b> Contributing authors</a></li>
<li class="chapter" data-level="1.3" data-path="index.html"><a href="index.html#research-overview"><i class="fa fa-check"></i><b>1.3</b> Research overview</a></li>
</ul></li>
<li class="chapter" data-level="2" data-path="software-availability.html"><a href="software-availability.html"><i class="fa fa-check"></i><b>2</b> Software availability</a></li>
<li class="chapter" data-level="3" data-path="data-availability.html"><a href="data-availability.html"><i class="fa fa-check"></i><b>3</b> Data availability</a></li>
<li class="chapter" data-level="4" data-path="compiling-and-running-our-experiments.html"><a href="compiling-and-running-our-experiments.html"><i class="fa fa-check"></i><b>4</b> Compiling and running our experiments</a><ul>
<li class="chapter" data-level="4.1" data-path="compiling-and-running-our-experiments.html"><a href="compiling-and-running-our-experiments.html#manual"><i class="fa fa-check"></i><b>4.1</b> Manual</a></li>
<li class="chapter" data-level="4.2" data-path="compiling-and-running-our-experiments.html"><a href="compiling-and-running-our-experiments.html#docker"><i class="fa fa-check"></i><b>4.2</b> Docker</a></li>
</ul></li>
<li class="chapter" data-level="5" data-path="digital-organisms.html"><a href="digital-organisms.html"><i class="fa fa-check"></i><b>5</b> Digital Organisms</a><ul>
<li class="chapter" data-level="5.1" data-path="digital-organisms.html"><a href="digital-organisms.html#virtual-hardware-components"><i class="fa fa-check"></i><b>5.1</b> Virtual Hardware Components</a></li>
<li class="chapter" data-level="5.2" data-path="digital-organisms.html"><a href="digital-organisms.html#instruction-set"><i class="fa fa-check"></i><b>5.2</b> Instruction set</a></li>
<li class="chapter" data-level="5.3" data-path="digital-organisms.html"><a href="digital-organisms.html#ancestral-genomes"><i class="fa fa-check"></i><b>5.3</b> Ancestral genomes</a><ul>
<li class="chapter" data-level="5.3.1" data-path="digital-organisms.html"><a href="digital-organisms.html#ancestral-genome-for-genetic-programming-experiment"><i class="fa fa-check"></i><b>5.3.1</b> Ancestral genome for genetic programming experiment</a></li>
<li class="chapter" data-level="5.3.2" data-path="digital-organisms.html"><a href="digital-organisms.html#ancestral-genome-for-directed-evolution-experiments"><i class="fa fa-check"></i><b>5.3.2</b> Ancestral genome for directed evolution experiments</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="6" data-path="conventional-genetic-programming-experiment.html"><a href="conventional-genetic-programming-experiment.html"><i class="fa fa-check"></i><b>6</b> Conventional genetic programming experiment</a><ul>
<li class="chapter" data-level="6.1" data-path="conventional-genetic-programming-experiment.html"><a href="conventional-genetic-programming-experiment.html#overview"><i class="fa fa-check"></i><b>6.1</b> Overview</a></li>
<li class="chapter" data-level="6.2" data-path="conventional-genetic-programming-experiment.html"><a href="conventional-genetic-programming-experiment.html#analysis-dependencies"><i class="fa fa-check"></i><b>6.2</b> Analysis dependencies</a></li>
<li class="chapter" data-level="6.3" data-path="conventional-genetic-programming-experiment.html"><a href="conventional-genetic-programming-experiment.html#setup"><i class="fa fa-check"></i><b>6.3</b> Setup</a></li>
<li class="chapter" data-level="6.4" data-path="conventional-genetic-programming-experiment.html"><a href="conventional-genetic-programming-experiment.html#number-of-successful-replicates"><i class="fa fa-check"></i><b>6.4</b> Number of successful replicates</a></li>
<li class="chapter" data-level="6.5" data-path="conventional-genetic-programming-experiment.html"><a href="conventional-genetic-programming-experiment.html#final-task-coverage"><i class="fa fa-check"></i><b>6.5</b> Final task coverage</a></li>
<li class="chapter" data-level="6.6" data-path="conventional-genetic-programming-experiment.html"><a href="conventional-genetic-programming-experiment.html#generation-2000-task-coverage"><i class="fa fa-check"></i><b>6.6</b> Generation 2,000 task coverage</a></li>
<li class="chapter" data-level="6.7" data-path="conventional-genetic-programming-experiment.html"><a href="conventional-genetic-programming-experiment.html#population-level-task-coverage"><i class="fa fa-check"></i><b>6.7</b> Population-level task coverage</a></li>
<li class="chapter" data-level="6.8" data-path="conventional-genetic-programming-experiment.html"><a href="conventional-genetic-programming-experiment.html#generations-elapsed-before-a-solution-evolves"><i class="fa fa-check"></i><b>6.8</b> Generations elapsed before a solution evolves</a></li>
<li class="chapter" data-level="6.9" data-path="conventional-genetic-programming-experiment.html"><a href="conventional-genetic-programming-experiment.html#best-task-coverage-over-time"><i class="fa fa-check"></i><b>6.9</b> Best task coverage over time</a></li>
<li class="chapter" data-level="6.10" data-path="conventional-genetic-programming-experiment.html"><a href="conventional-genetic-programming-experiment.html#manuscript-figure"><i class="fa fa-check"></i><b>6.10</b> Manuscript Figure</a></li>
</ul></li>
<li class="chapter" data-level="7" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html"><i class="fa fa-check"></i><b>7</b> Directed digital evolution experiment</a><ul>
<li class="chapter" data-level="7.1" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#overview-1"><i class="fa fa-check"></i><b>7.1</b> Overview</a></li>
<li class="chapter" data-level="7.2" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#analysis-dependencies-1"><i class="fa fa-check"></i><b>7.2</b> Analysis dependencies</a></li>
<li class="chapter" data-level="7.3" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#setup-1"><i class="fa fa-check"></i><b>7.3</b> Setup</a></li>
<li class="chapter" data-level="7.4" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#best-single-population-task-coverage"><i class="fa fa-check"></i><b>7.4</b> Best single-population task coverage</a><ul>
<li class="chapter" data-level="7.4.1" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#best-single-population-task-coverage-time-series"><i class="fa fa-check"></i><b>7.4.1</b> Best single-population task coverage time series</a></li>
</ul></li>
<li class="chapter" data-level="7.5" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#metapopulation-task-coverage"><i class="fa fa-check"></i><b>7.5</b> Metapopulation task coverage</a><ul>
<li class="chapter" data-level="7.5.1" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#metapopulation-task-coverage-time-series"><i class="fa fa-check"></i><b>7.5.1</b> Metapopulation task coverage time series</a></li>
</ul></li>
<li class="chapter" data-level="7.6" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#metapopulation-task-profile-diversity"><i class="fa fa-check"></i><b>7.6</b> Metapopulation task profile diversity</a><ul>
<li class="chapter" data-level="7.6.1" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#number-of-different-task-profiles"><i class="fa fa-check"></i><b>7.6.1</b> Number of different task profiles</a></li>
<li class="chapter" data-level="7.6.2" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#task-profile-spread"><i class="fa fa-check"></i><b>7.6.2</b> Task profile spread</a></li>
<li class="chapter" data-level="7.6.3" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#task-profile-entropy"><i class="fa fa-check"></i><b>7.6.3</b> Task profile entropy</a></li>
</ul></li>
<li class="chapter" data-level="7.7" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#task-coverage-per-n-populations"><i class="fa fa-check"></i><b>7.7</b> Task coverage per N populations</a></li>
<li class="chapter" data-level="7.8" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#average-number-of-different-populations-selected-per-generation"><i class="fa fa-check"></i><b>7.8</b> Average number of different populations selected per generation</a><ul>
<li class="chapter" data-level="7.8.1" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#entropy-of-selected-population-ids"><i class="fa fa-check"></i><b>7.8.1</b> Entropy of selected population IDs</a></li>
</ul></li>
<li class="chapter" data-level="7.9" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#average-number-of-organisms-in-populations-at-end-of-maturation-period"><i class="fa fa-check"></i><b>7.9</b> Average number of organisms in populations at end of maturation period</a></li>
<li class="chapter" data-level="7.10" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#average-generations-per-maturation-period"><i class="fa fa-check"></i><b>7.10</b> Average generations per maturation period</a></li>
<li class="chapter" data-level="7.11" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#representative-task-profiles"><i class="fa fa-check"></i><b>7.11</b> Representative task profiles</a></li>
<li class="chapter" data-level="7.12" data-path="directed-digital-evolution-experiment.html"><a href="directed-digital-evolution-experiment.html#manuscript-figures"><i class="fa fa-check"></i><b>7.12</b> Manuscript figures</a></li>
</ul></li>
<li class="chapter" data-level="8" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><i class="fa fa-check"></i><b>8</b> Aligned individual-level and population-level task directed evolution experiment</a><ul>
<li class="chapter" data-level="8.1" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#overview-2"><i class="fa fa-check"></i><b>8.1</b> Overview</a></li>
<li class="chapter" data-level="8.2" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#analysis-dependencies-2"><i class="fa fa-check"></i><b>8.2</b> Analysis dependencies</a></li>
<li class="chapter" data-level="8.3" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#setup-2"><i class="fa fa-check"></i><b>8.3</b> Setup</a></li>
<li class="chapter" data-level="8.4" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#best-single-population-task-coverage-1"><i class="fa fa-check"></i><b>8.4</b> Best single-population task coverage</a><ul>
<li class="chapter" data-level="8.4.1" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#best-single-population-task-coverage-time-series-1"><i class="fa fa-check"></i><b>8.4.1</b> Best single-population task coverage time series</a></li>
</ul></li>
<li class="chapter" data-level="8.5" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#metapopulation-task-coverage-1"><i class="fa fa-check"></i><b>8.5</b> Metapopulation task coverage</a><ul>
<li class="chapter" data-level="8.5.1" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#metapopulation-task-coverage-time-series-1"><i class="fa fa-check"></i><b>8.5.1</b> Metapopulation task coverage time series</a></li>
</ul></li>
<li class="chapter" data-level="8.6" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#metapopulation-task-profile-diversity-1"><i class="fa fa-check"></i><b>8.6</b> Metapopulation task profile diversity</a><ul>
<li class="chapter" data-level="8.6.1" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#number-of-different-task-profiles-1"><i class="fa fa-check"></i><b>8.6.1</b> Number of different task profiles</a></li>
<li class="chapter" data-level="8.6.2" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#task-profile-spread-1"><i class="fa fa-check"></i><b>8.6.2</b> Task profile spread</a></li>
<li class="chapter" data-level="8.6.3" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#task-profile-entropy-1"><i class="fa fa-check"></i><b>8.6.3</b> Task profile entropy</a></li>
</ul></li>
<li class="chapter" data-level="8.7" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#task-coverage-per-n-populations-1"><i class="fa fa-check"></i><b>8.7</b> Task coverage per N populations</a></li>
<li class="chapter" data-level="8.8" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#average-number-of-different-populations-selected-per-generation-1"><i class="fa fa-check"></i><b>8.8</b> Average number of different populations selected per generation</a><ul>
<li class="chapter" data-level="8.8.1" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#entropy-of-selected-population-ids-1"><i class="fa fa-check"></i><b>8.8.1</b> Entropy of selected population IDs</a></li>
</ul></li>
<li class="chapter" data-level="8.9" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#average-number-of-organisms-in-populations-at-end-of-maturation-period-1"><i class="fa fa-check"></i><b>8.9</b> Average number of organisms in populations at end of maturation period</a></li>
<li class="chapter" data-level="8.10" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#average-generations-per-maturation-period-1"><i class="fa fa-check"></i><b>8.10</b> Average generations per maturation period</a></li>
<li class="chapter" data-level="8.11" data-path="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html"><a href="aligned-individual-level-and-population-level-task-directed-evolution-experiment.html#manuscript-figures-1"><i class="fa fa-check"></i><b>8.11</b> Manuscript figures</a></li>
</ul></li>
<li class="chapter" data-level="9" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html"><i class="fa fa-check"></i><b>9</b> Varying population maturation period</a><ul>
<li class="chapter" data-level="9.1" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#overview-3"><i class="fa fa-check"></i><b>9.1</b> Overview</a></li>
<li class="chapter" data-level="9.2" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#analysis-dependencies-3"><i class="fa fa-check"></i><b>9.2</b> Analysis dependencies</a></li>
<li class="chapter" data-level="9.3" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#setup-3"><i class="fa fa-check"></i><b>9.3</b> Setup</a></li>
<li class="chapter" data-level="9.4" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#average-number-of-organisms"><i class="fa fa-check"></i><b>9.4</b> Average number of organisms</a></li>
<li class="chapter" data-level="9.5" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#average-generations-elapsed-during-the-maturation-period"><i class="fa fa-check"></i><b>9.5</b> Average generations elapsed during the maturation period</a></li>
<li class="chapter" data-level="9.6" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#total-generations"><i class="fa fa-check"></i><b>9.6</b> Total generations</a></li>
<li class="chapter" data-level="9.7" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#performance"><i class="fa fa-check"></i><b>9.7</b> Performance</a><ul>
<li class="chapter" data-level="9.7.1" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#cpu-cycles-per-replication"><i class="fa fa-check"></i><b>9.7.1</b> CPU cycles per replication</a></li>
<li class="chapter" data-level="9.7.2" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#best-population-task-coverage"><i class="fa fa-check"></i><b>9.7.2</b> Best-population task coverage</a></li>
<li class="chapter" data-level="9.7.3" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#metapopulation-task-coverage-2"><i class="fa fa-check"></i><b>9.7.3</b> Metapopulation task coverage</a></li>
</ul></li>
<li class="chapter" data-level="9.8" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#population-level-task-profile-diversity"><i class="fa fa-check"></i><b>9.8</b> Population-level Task Profile Diversity</a><ul>
<li class="chapter" data-level="9.8.1" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#task-profile-richness"><i class="fa fa-check"></i><b>9.8.1</b> Task profile richness</a></li>
<li class="chapter" data-level="9.8.2" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#task-profile-entropy-2"><i class="fa fa-check"></i><b>9.8.2</b> Task profile entropy</a></li>
<li class="chapter" data-level="9.8.3" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#spread-average-cosine-distance"><i class="fa fa-check"></i><b>9.8.3</b> Spread (average cosine distance)</a></li>
</ul></li>
<li class="chapter" data-level="9.9" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#selection"><i class="fa fa-check"></i><b>9.9</b> Selection</a><ul>
<li class="chapter" data-level="9.9.1" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#average-number-of-unique-populations-selected"><i class="fa fa-check"></i><b>9.9.1</b> Average number of unique populations selected</a></li>
<li class="chapter" data-level="9.9.2" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#average-entropy-of-selection-ids"><i class="fa fa-check"></i><b>9.9.2</b> Average entropy of selection ids</a></li>
</ul></li>
<li class="chapter" data-level="9.10" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#manuscript-figures-2"><i class="fa fa-check"></i><b>9.10</b> Manuscript Figures</a></li>
<li class="chapter" data-level="9.11" data-path="varying-population-maturation-period.html"><a href="varying-population-maturation-period.html#discussion"><i class="fa fa-check"></i><b>9.11</b> Discussion</a></li>
</ul></li>
<li class="chapter" data-level="10" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html"><i class="fa fa-check"></i><b>10</b> Varied genome lengths</a><ul>
<li class="chapter" data-level="10.1" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#overview-4"><i class="fa fa-check"></i><b>10.1</b> Overview</a></li>
<li class="chapter" data-level="10.2" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#analysis-dependencies-4"><i class="fa fa-check"></i><b>10.2</b> Analysis dependencies</a></li>
<li class="chapter" data-level="10.3" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#setup-4"><i class="fa fa-check"></i><b>10.3</b> Setup</a></li>
<li class="chapter" data-level="10.4" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#average-generations-per-maturation-period-2"><i class="fa fa-check"></i><b>10.4</b> Average generations per maturation period</a></li>
<li class="chapter" data-level="10.5" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#total-generations-over-experiment"><i class="fa fa-check"></i><b>10.5</b> Total generations over experiment</a></li>
<li class="chapter" data-level="10.6" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#performance-1"><i class="fa fa-check"></i><b>10.6</b> Performance</a><ul>
<li class="chapter" data-level="10.6.1" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#cpu-cycles-per-replication-1"><i class="fa fa-check"></i><b>10.6.1</b> CPU cycles per replication</a></li>
<li class="chapter" data-level="10.6.2" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#best-single-population-task-coverage-2"><i class="fa fa-check"></i><b>10.6.2</b> Best single-population task coverage</a></li>
<li class="chapter" data-level="10.6.3" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#metapopulation-task-coverage-3"><i class="fa fa-check"></i><b>10.6.3</b> Metapopulation task coverage</a></li>
</ul></li>
<li class="chapter" data-level="10.7" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#population-level-task-profile-diversity-1"><i class="fa fa-check"></i><b>10.7</b> Population-level task profile diversity</a><ul>
<li class="chapter" data-level="10.7.1" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#task-profile-richness-1"><i class="fa fa-check"></i><b>10.7.1</b> Task profile richness</a></li>
<li class="chapter" data-level="10.7.2" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#task-profile-entropy-3"><i class="fa fa-check"></i><b>10.7.2</b> Task profile entropy</a></li>
<li class="chapter" data-level="10.7.3" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#spread-avg-cosine-distance"><i class="fa fa-check"></i><b>10.7.3</b> Spread (avg cosine distance)</a></li>
</ul></li>
<li class="chapter" data-level="10.8" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#selection-1"><i class="fa fa-check"></i><b>10.8</b> Selection</a><ul>
<li class="chapter" data-level="10.8.1" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#average-number-of-unique-populations-selected-1"><i class="fa fa-check"></i><b>10.8.1</b> Average number of unique populations selected</a></li>
<li class="chapter" data-level="10.8.2" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#average-entropy-of-selection-ids-1"><i class="fa fa-check"></i><b>10.8.2</b> Average entropy of selection ids</a></li>
</ul></li>
<li class="chapter" data-level="10.9" data-path="varied-genome-lengths.html"><a href="varied-genome-lengths.html#discussion-1"><i class="fa fa-check"></i><b>10.9</b> Discussion</a></li>
</ul></li>
<li class="chapter" data-level="11" data-path="population-propagule-sample-size.html"><a href="population-propagule-sample-size.html"><i class="fa fa-check"></i><b>11</b> Population propagule sample size</a><ul>
<li class="chapter" data-level="11.1" data-path="population-propagule-sample-size.html"><a href="population-propagule-sample-size.html#overview-5"><i class="fa fa-check"></i><b>11.1</b> Overview</a></li>
<li class="chapter" data-level="11.2" data-path="population-propagule-sample-size.html"><a href="population-propagule-sample-size.html#analysis-dependencies-5"><i class="fa fa-check"></i><b>11.2</b> Analysis dependencies</a></li>
<li class="chapter" data-level="11.3" data-path="population-propagule-sample-size.html"><a href="population-propagule-sample-size.html#setup-5"><i class="fa fa-check"></i><b>11.3</b> Setup</a></li>
<li class="chapter" data-level="11.4" data-path="population-propagule-sample-size.html"><a href="population-propagule-sample-size.html#average-number-of-organisms-1"><i class="fa fa-check"></i><b>11.4</b> Average number of organisms</a></li>
<li class="chapter" data-level="11.5" data-path="population-propagule-sample-size.html"><a href="population-propagule-sample-size.html#average-generations-per-maturation-period-3"><i class="fa fa-check"></i><b>11.5</b> Average generations per maturation period</a></li>
<li class="chapter" data-level="11.6" data-path="population-propagule-sample-size.html"><a href="population-propagule-sample-size.html#performance-2"><i class="fa fa-check"></i><b>11.6</b> Performance</a><ul>
<li class="chapter" data-level="11.6.1" data-path="population-propagule-sample-size.html"><a href="population-propagule-sample-size.html#best-population-task-coverage-1"><i class="fa fa-check"></i><b>11.6.1</b> Best population task coverage</a></li>
<li class="chapter" data-level="11.6.2" data-path="population-propagule-sample-size.html"><a href="population-propagule-sample-size.html#metapopulation-task-coverage-4"><i class="fa fa-check"></i><b>11.6.2</b> Metapopulation task coverage</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i>References</a></li>
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