# Oxford Planarian Bioinformatics Community

<img src="https://github.com/jakke-neiro/oxplatys/blob/master/oxfordplanarianlogo.png" width="500">

Jakke Neiro<sup>1</sup> & Nathan Kenny<sup>2</sup>

1. Aboobaker lab, Department of Zoology, University of Oxford jakke.neiro@zoo.ox.ac.uk
2. Solana lab, Oxford Brookes University

This repository includes code and files generated by the Oxford Planarian Bioinformatics Community.  

## Annotation of the *Schmidtea mediterranea* genome
This [notebook]() describes the generation of new expression-driven annotation of the sexual planarian genome (*S. mediterranea*) based on total RNA-seq data from this species. The annotation is based on 183 planarian RNA-seq samples (see the [sample list](https://github.com/jakke-neiro/oxplatys/blob/master/Smed.txt)), the [PlanMine sexual genome annotation (SMESG-high)](), and the PlanMine sexual genome ()

## Annotation of the D. japonica genome