#' Add metrics to a cutpointr or roc_cutpointr object #' #' By default, the output of cutpointr includes the optimized metric and several #' other metrics. This function adds further metrics. Suitable metric functions #' are all metric functions that are included in the package or that comply #' with those standards. #' #' @param object A cutpointr or roc_cutpointr object. #' @param metric (list) A list of metric functions to be added. #' @return A cutpointr or roc_cutpointr object (a data.frame) with one or more added columns. #' @examples #' library(dplyr) #' library(cutpointr) #' cutpointr(suicide, dsi, suicide, gender) %>% #' add_metric(list(ppv, npv)) %>% #' select(optimal_cutpoint, subgroup, AUC, sum_sens_spec, ppv, npv) #' @export #' @family main cutpointr functions #' @importFrom rlang !! := add_metric <- function(object, metric) { if (!is.list(metric)) stop("The metric function(s) must be given as a list.") stopifnot(("cutpointr" %in% class(object)) | ("roc_cutpointr" %in% class(object))) if ("cutpointr" %in% class(object)) { met <- purrr::map(metric, function(metric_func) { if (!is.function(metric_func)) { stop("The list elements of metric have to be functions.") } # Get numbers of TP, FP, TN, FN at optimal cutpoint(s) from ROC curve(s) # and calculate the metric(s). Allow for type instability of the metric func: one_met <- purrr::pmap_df(list(object$optimal_cutpoint, object$roc_curve, object$direction), function(optimal_cutpoint, roc_curve, direction) { opt_ind <- get_opt_ind(roc_curve = roc_curve, oc = optimal_cutpoint, direction = direction) met <- metric_func(tp = roc_curve$tp[opt_ind], fp = roc_curve$fp[opt_ind], tn = roc_curve$tn[opt_ind], fn = roc_curve$fn[opt_ind]) met_name <- colnames(met) if (length(met_name) > 1) { stop("The metric function should return one column or a vector.") } if (is.null(met_name)) met_name <- "added_metric" if (length(met) > 1) { met <- list(as.numeric(unlist(met))) } else { met <- as.numeric(met) } tibble::tibble(!!met_name := met) }) class(one_met) <- class(object) return(one_met) }) oc <- dplyr::bind_cols(object, met) return(oc) } else if ("roc_cutpointr" %in% class(object)) { met <- purrr::map(metric, function(metric_func) { if (!is.function(metric_func)) { stop("The list elements of metric have to be functions.") } # Get numbers of TP, FP, TN, FN at optimal cutpoint(s) from ROC curve(s) # and calculate the metric(s). Allow for type instability of the metric func: met <- metric_func(tp = object$tp, fp = object$fp, tn = object$tn, fn = object$fn) met_name <- colnames(met) if (length(met_name) > 1) { stop("The metric function should return one column or a vector.") } if (is.null(met_name)) met_name <- "added_metric" met <- as.numeric(met) met <- tibble::tibble(!!met_name := met) class(met) <- class(object) return(met) }) roc_added <- dplyr::bind_cols(object, met) return(roc_added) } }