Raw File
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/CCA_wrappers.r
\title{Compare two cluster sets matched to CCA}
compareClusterCalls(cl, ref.cl, cl.anno, plot.title = NA,
  plot.silent = TRUE, heat.colors = colorRampPalette(c("grey99",
  "orange", "red"))(100), row.cl.num = min(length(unique(cl)),
\item{cl}{a matrix (rows=genes x columns=samples) of gene expression data
(e.g., scRNA-seq)}

\item{by.rows}{By rows (TRUE; default) or by columns}
a reordered matrix
This function takes cluster calls defined in two different data sets and then
determines to what extent these cluster calls match up with cluster calls from CCA.
back to top