plot.im.Rd
\name{plot.im}
\alias{plot.im}
\alias{image.im}
\title{Plot a Pixel Image}
\description{
Plot a pixel image.
}
\usage{
\method{plot}{im}(x, \dots,
col=NULL, valuesAreColours=NULL,
log=FALSE,
ribbon=TRUE,
ribside=c("right", "left", "bottom", "top"),
ribsep=0.15, ribwid=0.05, ribn=1024,
ribscale=1, ribargs=list())
}
\arguments{
\item{x}{
The pixel image to be plotted.
An object of class \code{"im"} (see \code{\link{im.object}}).
}
\item{\dots}{
Extra arguments passed to \code{\link[graphics]{image.default}}
to control the plot. See Details.
}
\item{col}{
Colours for displaying the pixel values.
Either a character vector of colour values,
or an object of class \code{\link{colourmap}}.
}
\item{valuesAreColours}{
Logical value. If \code{TRUE}, the pixel values of \code{x}
are to be interpreted as colour values.
}
\item{log}{
Logical value. If \code{TRUE}, the colour map will be
evenly-spaced on a logarithmic scale.
}
\item{ribbon}{
Logical flag indicating whether to display a ribbon
showing the colour map.
}
\item{ribside}{
Character string indicating where to display the ribbon
relative to the main image.
}
\item{ribsep}{
Factor controlling the space between the ribbon and the image.
}
\item{ribwid}{
Factor controlling the width of the ribbon.
}
\item{ribn}{
Number of different values to display in the ribbon.
}
\item{ribscale}{
Rescaling factor for tick marks. The values on the numerical scale
printed beside the ribbon will be multiplied by this rescaling factor.
}
\item{ribargs}{
List of additional arguments passed to
\code{\link[graphics]{image.default}} and
\code{\link[graphics]{axis}}
to control the display of the ribbon and its scale axis. These may override
the \code{\dots} arguments.
}
}
\value{
The colour map used. An object of class \code{"colourmap"}.
}
\details{
This is the \code{plot} method for the class \code{"im"}.
[It is also the \code{image} method for \code{"im"}.]
The pixel image \code{x} is displayed on the current plot device,
using equal scales on the \code{x} and \code{y} axes.
If \code{ribbon=TRUE}, a legend will be plotted.
The legend consists of a colour ribbon and an axis with tick-marks,
showing the correspondence between the pixel values and the colour map.
By default, the ribbon is placed at the right of the main image.
This can be changed using the argument \code{ribside}.
Arguments \code{ribsep, ribwid, ribn} control the appearance of the
ribbon.
The width of the ribbon is \code{ribwid} times the size of the pixel
image, where `size' means the larger of the width and the height.
The distance separating the ribbon and the image is \code{ribsep} times
the size of the pixel image. The ribbon contains \code{ribn}
different numerical values, evenly spaced between the minimum and
maximum pixel values in the image \code{x}, rendered according to
the chosen colour map.
Arguments \code{ribscale, ribargs} control the annotation of the
colour ribbon. To plot the colour ribbon without the axis and
tick-marks, use \code{ribargs=list(axes=FALSE)}.
Normally the pixel values are displayed using the colours given in the
argument \code{col}. This may be either an explicit colour map
(an object of class \code{"colourmap"}, created by the function
\code{\link{colourmap}}) or a character vector or integer vector
that specifies a set of colours.
If \code{col} is an explicit colour map
(an object of class \code{"colourmap"}) then the same colour
always represents the same numeric value. For example this ensures
that when we plot different images, the colour maps are consistent.
If \code{col} is a character vector or integer vector that specifies
colours, then the colour mapping will be stretched to match the range of
pixel values in the image \code{x}. In this case, the mapping of pixel values
to colours is determined as follows.
\describe{
\item{logical-valued images:}{the values \code{FALSE} and
\code{TRUE} are mapped to the colours \code{col[1]} and
\code{col[2]} respectively.
The vector \code{col} should have length 2.
}
\item{factor-valued images:}{the factor levels \code{levels(x)}
are mapped to the entries of \code{col} in order. The vector
\code{col} should have the same length as \code{levels(x)}.
}
\item{numeric-valued images:}{
By default, the range of pixel values in \code{x}
is divided into \code{n = length(col)}
equal subintervals, which are mapped to the colours in \code{col}.
(If \code{col} was not specified, it defaults to a vector of 255
colours.)
Alternatively if the argument \code{zlim} is given, it should be
a vector of length 2 specifying an interval of real numbers.
This interval will be used instead of the range of pixel
values. The interval from \code{zlim[1]} to \code{zlim[2]} will be
mapped to the colours in \code{col}. This facility enables the user to
plot several images using a consistent colour map.
Alternatively if the argument \code{breaks} is given, then this specifies
the endpoints of the subintervals that are mapped to each colour.
This is incompatible with \code{zlim}.
The arguments \code{col} and \code{zlim} or \code{breaks}
are passed to the function \code{\link{image.default}}.
For examples of the use of these arguments,
see \code{\link{image.default}}.
}
}
Other graphical parameters controlling the display of both the pixel image
and the ribbon can be passed through the \code{...} arguments
to the function \code{\link[graphics]{image.default}}.
A parameter is handled only if it is one of the following:
\itemize{
\item a formal argument of \code{\link[graphics]{image.default}}
that is operative when \code{add=TRUE}.
\item one of the
parameters \code{"main", "asp", "sub", "axes", "ann",
"cex", "font", "cex.axis", "cex.lab", "cex.main", "cex.sub",
"col.axis", "col.lab", "col.main", "col.sub",
"font.axis", "font.lab", "font.main", "font.sub"}
described in \code{\link[graphics]{par}}.
\item the argument \code{box}, a logical value specifying whether
a box should be drawn.
}
By default, images are plotted using image rasters rather than
polygons, by setting \code{useRaster=TRUE} in \code{image.default}.
Alternatively, the pixel values could be directly
interpretable as colour values in \R. That is, the pixel values
could be character strings that represent colours, or
values of a factor whose levels are character strings representing
colours.
\itemize{
\item If \code{valuesAreColours=TRUE}, then the pixel values will
be interpreted as colour values and displayed using these colours.
\item If \code{valuesAreColours=FALSE}, then the pixel values will
\emph{not} be interpreted as colour values, even if they could be.
\item If \code{valuesAreColours=NULL}, the algorithm will guess
what it should do. If the argument \code{col} is given,
the pixel values will \emph{not} be interpreted as colour values. Otherwise,
if all the pixel values are strings that represent colours, then
they will be interpreted and displayed as colours.
}
If pixel values are interpreted as colours,
the arguments \code{col} and \code{ribbon} will be ignored,
and a ribbon will not be plotted.
}
\section{Image Rendering Errors and Problems}{
The help for \code{\link[graphics]{image.default}} explains that
errors may occur, or images may be rendered incorrectly, on some
devices, depending on the availability of colours and other
device-specific constraints.
An error may occur on some graphics devices if the image is very
large. If this happens, try setting \code{useRaster=FALSE} in the
call to \code{plot.im}.
The error message
\code{useRaster=TRUE can only be used with a regular grid}
means that the \eqn{x} and \eqn{y} coordinates of the pixels in the
image are not perfectly equally spaced, due to numerical rounding.
This occurs with some images created by earlier versions of \pkg{spatstat}.
To repair the coordinates in an image \code{X}, type
\code{X <- as.im(X)}.
}
\seealso{
\code{\link{im.object}},
\code{\link{colourmap}},
\code{\link{contour.im}},
\code{\link{persp.im}},
\code{\link[graphics]{image.default}},
\code{\link{spatstat.options}}
}
\examples{
# an image
Z <- setcov(owin())
plot(Z)
plot(Z, ribside="bottom")
# stretchable colour map
plot(Z, col=terrain.colors(128), axes=FALSE)
# fixed colour map
tc <- colourmap(rainbow(128), breaks=seq(-1,2,length=129))
plot(Z, col=tc)
# tweaking the plot
plot(Z, main="La vie en bleu", col.main="blue", cex.main=1.5,
box=FALSE,
ribargs=list(col.axis="blue", col.ticks="blue", cex.axis=0.75))
# log scale
V <- eval.im(exp(exp(Z+2))/1e4)
plot(V, log=TRUE, main="Log scale")
}
\author{Adrian Baddeley
\email{Adrian.Baddeley@csiro.au}
\url{http://www.maths.uwa.edu.au/~adrian/}
and Rolf Turner
\email{r.turner@auckland.ac.nz}
}
\keyword{spatial}
\keyword{hplot}