https://github.com/kennethabarr/HumanChimp
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Tip revision: 1722b3484d1120384c910bef13bffd6a6cd6179a authored by kennethabarr on 02 July 2021, 18:06:58 UTC
first commit
Tip revision: 1722b34
cluster_solo.json
{
    "__default__" :
    {
      "mem" : 8000,
      "n" : 1,
      "tasks" : 1,
      "name" : "{rule}-{wildcards}",
      "logfile": "log/{rule}-{wildcards}.out",
      "partition": "broadwl"
    },
    "fastqc" :
    {
      "mem" : 8000
    },
    "align_human" :
    {
      "mem": 48000,
      "tasks": 20
    },
    "align_chimp" :
    {
      "mem": 48000,
      "tasks": 8
    },
    "run_demuxlet_human" :
    {
      "mem": 32000,
      "tasks": 1,
      "partition": "gilad"
    },
    "run_demuxlet_chimp" :
    {
      "mem": 32000,
      "tasks": 1
    },
    "build_chimp_vcf_pileup" :
    {
      "mem": 32000,
      "tasks": 8
    },
    "make_popscle_bam_human" :
    {
      "mem": 32000,
      "tasks": 8
    },
    "make_popscle_bam_chimp" :
    {
      "mem": 32000,
        "tasks": 1
    },
     "human_filtered_bam" :
    {
      "mem": 32000,
      "tasks": 8
    },
    "chimp_filtered_bam" :
    {
      "mem": 32000,
      "tasks": 1
    },
    "build_human_vcf_pileup" :
    {
      "mem": 32000,
      "tasks": 1
    },
    "run_molinfo_human" :
    {
      "mem": 48000,
      "partition": "broadwl",
      "tasks": 1
    },
    "run_molinfo_chimp" :
    {
      "mem": 48000,
      "partition": "broadwl",
      "tasks": 1
    },
    "assign_species" :
    {
      "mem": 16000,
      "tasks": 1
    },
    "render_report" :
    {
      "mem": 32000,
      "tasks": 4
    }
}
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