https://github.com/kennethabarr/HumanChimp
Tip revision: 1722b3484d1120384c910bef13bffd6a6cd6179a authored by kennethabarr on 02 July 2021, 18:06:58 UTC
first commit
first commit
Tip revision: 1722b34
cluster_solo.json
{
"__default__" :
{
"mem" : 8000,
"n" : 1,
"tasks" : 1,
"name" : "{rule}-{wildcards}",
"logfile": "log/{rule}-{wildcards}.out",
"partition": "broadwl"
},
"fastqc" :
{
"mem" : 8000
},
"align_human" :
{
"mem": 48000,
"tasks": 20
},
"align_chimp" :
{
"mem": 48000,
"tasks": 8
},
"run_demuxlet_human" :
{
"mem": 32000,
"tasks": 1,
"partition": "gilad"
},
"run_demuxlet_chimp" :
{
"mem": 32000,
"tasks": 1
},
"build_chimp_vcf_pileup" :
{
"mem": 32000,
"tasks": 8
},
"make_popscle_bam_human" :
{
"mem": 32000,
"tasks": 8
},
"make_popscle_bam_chimp" :
{
"mem": 32000,
"tasks": 1
},
"human_filtered_bam" :
{
"mem": 32000,
"tasks": 8
},
"chimp_filtered_bam" :
{
"mem": 32000,
"tasks": 1
},
"build_human_vcf_pileup" :
{
"mem": 32000,
"tasks": 1
},
"run_molinfo_human" :
{
"mem": 48000,
"partition": "broadwl",
"tasks": 1
},
"run_molinfo_chimp" :
{
"mem": 48000,
"partition": "broadwl",
"tasks": 1
},
"assign_species" :
{
"mem": 16000,
"tasks": 1
},
"render_report" :
{
"mem": 32000,
"tasks": 4
}
}