https://github.com/pjdiebold/OIL-PCR_Linking_plasmid-based_beta-lactamases
Tip revision: 6d5b25dfa6d67703f06f74c24f7efe27bcf9d8dd authored by pjdiebold on 15 June 2021, 20:27:54 UTC
Update README.md
Update README.md
Tip revision: 6d5b25d
make_blastdb.sh
#!/bin/bash
export PATH=/programs/ncbi-blast-2.9.0+/bin:$PATH
WRK=/workdir/users/pd378/oilPCR/bulk_process_all_OIL_for_paper
FASTA=$WRK/s7_blast_targets/blast_db/arg_colapse_Tn_DB.fa
OUT=$WRK/s7_blast_targets/blast_db
cd $OUT
makeblastdb -in $FASTA -dbtype nucl -parse_seqids
