Package: treediff
Title: Testing Differences Between Families of Trees
Version: 0.2.1
Date: 2024-02-11
Authors@R: 
    c(person("Nathalie", "Vialaneix", , "nathalie.vialaneix@inrae.fr", 
             role = c("aut", "cre"), 
             comment = c(ORCID = "0000-0003-1156-0639")),
      person("Gwendaelle", "Cardenas", , , role = "aut"),
      person("Marie", "Chavent", , "marie.chavent@u-bordeaux.fr", role = "aut"),
      person("Sylvain", "Foissac", , "sylvain.foissac@inrae.fr", role = "aut"),
      person("Pierre", "Neuvial", , "pierre.neuvial@math.univ-toulouse.fr", 
             role = "aut", comment = c(ORCID = "0000-0003-3584-9998")),
      person("Nathanael", "Randriamihamison", , , role = "aut"))
Description: Perform test to detect differences in structure between families of
             trees. The method is based on cophenetic distances and aggregated
             Student's tests.
Depends: R (>= 4.0.0)
Imports: 
  adjclust, 
  BiocGenerics,
  csaw, 
  data.table, 
  dplyr,
  InteractionSet, 
  limma, 
  methods, 
  stats, 
  SummarizedExperiment, 
  reshape2, 
  testthat, 
  rlang, 
  HiCDOC,
  purrr
License: GPL (>= 3)
Encoding: UTF-8
RoxygenNote: 7.2.3
Suggests: 
    knitr,
    rmarkdown
URL: https://forgemia.inra.fr/scales/treediff
BugReports: https://forgemia.inra.fr/scales/treediff/-/issues