name: matam

channels:
- conda-forge
- bioconda
- defaults


dependencies:
  - gxx_linux-64
  - make
  - cmake
  - autoconf
  - automake

  - coreutils # Centos6 (otherwise sort --parallel is unrecognized)
  - wget
  - bzip2
  - zlib
  - python >=3
  - numpy
  - samtools
  - sga
  - sortmerna==2.1b
  - vsearch
  - rdptools
  - krona

  - curl
  - sed
  - git
  - pytest
  - exonerate==2.2
  - quast==5.0.2


prefix: /home/lcouderc/miniconda3