{ "cells": [ { "cell_type": "code", "execution_count": 9, "metadata": { "collapsed": false }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "vsearch v1.9.2_linux_x86_64, 7.5GB RAM, 4 cores\r\n", "https://github.com/torognes/vsearch\r\n", "\r\n", "Merging reads 0% \r", "Merging reads 1% \r", "Merging reads 2% \r", "Merging reads 2% \r", "Merging reads 3% \r", "Merging reads 4% \r", "Merging reads 5% \r", "Merging reads 6% \r", "Merging reads 7% \r", "Merging reads 7% \r", "Merging reads 8% \r", "Merging reads 9% \r", "Merging reads 10% \r", "Merging reads 11% \r", "Merging reads 12% \r", "Merging reads 12% \r", "Merging reads 13% \r", "Merging reads 14% \r", "Merging reads 15% \r", "Merging reads 16% \r", "Merging reads 17% \r", "Merging reads 17% \r", "Merging reads 18% \r", "Merging reads 19% \r", "Merging reads 20% \r", "Merging reads 21% \r", "Merging reads 21% \r", "Merging reads 22% \r", "Merging reads 23% \r", "Merging reads 24% \r", "Merging reads 25% \r", "Merging reads 26% \r", "Merging reads 26% \r", "Merging reads 27% \r", "Merging reads 28% \r", "Merging reads 29% \r", "Merging reads 30% \r", "Merging reads 31% \r", "Merging reads 31% \r", "Merging reads 32% \r", "Merging reads 33% \r", "Merging reads 34% \r", "Merging reads 35% \r", "Merging reads 36% \r", "Merging reads 36% \r", "Merging reads 37% \r", "Merging reads 38% \r", "Merging reads 39% \r", "Merging reads 40% \r", "Merging reads 40% \r", "Merging reads 41% \r", "Merging reads 42% \r", "Merging reads 43% \r", "Merging reads 44% \r", "Merging reads 45% \r", "Merging reads 45% \r", "Merging reads 46% \r", "Merging reads 47% \r", "Merging reads 48% \r", "Merging reads 49% \r", "Merging reads 50% \r", "Merging reads 50% \r", "Merging reads 51% \r", "Merging reads 52% \r", "Merging reads 53% \r", "Merging reads 54% \r", "Merging reads 55% \r", "Merging reads 55% \r", "Merging reads 56% \r", "Merging reads 57% \r", "Merging reads 58% \r", "Merging reads 59% \r", "Merging reads 59% \r", "Merging reads 60% \r", "Merging reads 61% \r", "Merging reads 62% \r", "Merging reads 63% \r", "Merging reads 64% \r", "Merging reads 64% \r", "Merging reads 65% \r", "Merging reads 66% \r", "Merging reads 67% \r", "Merging reads 68% \r", "Merging reads 69% \r", "Merging reads 69% \r", "Merging reads 70% \r", "Merging reads 71% \r", "Merging reads 72% \r", "Merging reads 73% \r", "Merging reads 74% \r", "Merging reads 74% \r", "Merging reads 75% \r", "Merging reads 76% \r", "Merging reads 77% \r", "Merging reads 78% \r", "Merging reads 78% \r", "Merging reads 79% \r", "Merging reads 80% \r", "Merging reads 81% \r", "Merging reads 82% \r", "Merging reads 83% \r", "Merging reads 83% \r", "Merging reads 84% \r", "Merging reads 85% \r", "Merging reads 86% \r", "Merging reads 87% \r", "Merging reads 88% \r", "Merging reads 88% \r", "Merging reads 89% \r", "Merging reads 90% \r", "Merging reads 91% \r", "Merging reads 92% \r", "Merging reads 93% \r", "Merging reads 93% \r", "Merging reads 94% \r", "Merging reads 95% \r", "Merging reads 96% \r", "Merging reads 97% \r", "Merging reads 97% \r", "Merging reads 98% \r", "Merging reads 99% \r", "Merging reads 100% \r", "Merging reads 100%\r\n", "18779 read pairs total\r\n", "371 pairs merged (2.0%) and 18408 pairs not merged (98.0%).\r\n" ] } ], "source": [ "%%bash\n", "vsearch-1.9.2-linux-x86_64 \\\n", " --fastq_mergepairs mergetest/mergetest_edits/L20090356_R1_.fastq.gz \\\n", " --reverse mergetest/mergetest_edits/L20090356_R2_.fastq.gz \\\n", " --fastqout_notmerged_fwd test_R1 \\\n", " --fastqout_notmerged_rev test_R2 \\\n", " --fastqout test_merge \\\n", " --fasta_width 0 \\\n", " --fastq_minmergelen 32 " ] }, { "cell_type": "code", "execution_count": 10, "metadata": { "collapsed": false }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "vsearch v1.9.2_linux_x86_64, 7.5GB RAM, 4 cores\r\n", "https://github.com/torognes/vsearch\r\n", "\r\n", "Merging reads 0% \r", "Merging reads 1% \r", "Merging reads 2% \r", "Merging reads 2% \r", "Merging reads 3% \r", "Merging reads 4% \r", "Merging reads 5% \r", "Merging reads 6% \r", "Merging reads 7% \r", "Merging reads 7% \r", "Merging reads 8% \r", "Merging reads 9% \r", "Merging reads 10% \r", "Merging reads 11% \r", "Merging reads 12% \r", "Merging reads 12% \r", "Merging reads 13% \r", "Merging reads 14% \r", "Merging reads 15% \r", "Merging reads 16% \r", "Merging reads 17% \r", "Merging reads 17% \r", "Merging reads 18% \r", "Merging reads 19% \r", "Merging reads 20% \r", "Merging reads 21% \r", "Merging reads 21% \r", "Merging reads 22% \r", "Merging reads 23% \r", "Merging reads 24% \r", "Merging reads 25% \r", "Merging reads 26% \r", "Merging reads 26% \r", "Merging reads 27% \r", "Merging reads 28% \r", "Merging reads 29% \r", "Merging reads 30% \r", "Merging reads 31% \r", "Merging reads 31% \r", "Merging reads 32% \r", "Merging reads 33% \r", "Merging reads 34% \r", "Merging reads 35% \r", "Merging reads 36% \r", "Merging reads 36% \r", "Merging reads 37% \r", "Merging reads 38% \r", "Merging reads 39% \r", "Merging reads 40% \r", "Merging reads 40% \r", "Merging reads 41% \r", "Merging reads 42% \r", "Merging reads 43% \r", "Merging reads 44% \r", "Merging reads 45% \r", "Merging reads 45% \r", "Merging reads 46% \r", "Merging reads 47% \r", "Merging reads 48% \r", "Merging reads 49% \r", "Merging reads 50% \r", "Merging reads 50% \r", "Merging reads 51% \r", "Merging reads 52% \r", "Merging reads 53% \r", "Merging reads 54% \r", "Merging reads 55% \r", "Merging reads 55% \r", "Merging reads 56% \r", "Merging reads 57% \r", "Merging reads 58% \r", "Merging reads 59% \r", "Merging reads 59% \r", "Merging reads 60% \r", "Merging reads 61% \r", "Merging reads 62% \r", "Merging reads 63% \r", "Merging reads 64% \r", "Merging reads 64% \r", "Merging reads 65% \r", "Merging reads 66% \r", "Merging reads 67% \r", "Merging reads 68% \r", "Merging reads 69% \r", "Merging reads 69% \r", "Merging reads 70% \r", "Merging reads 71% \r", "Merging reads 72% \r", "Merging reads 73% \r", "Merging reads 74% \r", "Merging reads 74% \r", "Merging reads 75% \r", "Merging reads 76% \r", "Merging reads 77% \r", "Merging reads 78% \r", "Merging reads 78% \r", "Merging reads 79% \r", "Merging reads 80% \r", "Merging reads 81% \r", "Merging reads 82% \r", "Merging reads 83% \r", "Merging reads 83% \r", "Merging reads 84% \r", "Merging reads 85% \r", "Merging reads 86% \r", "Merging reads 87% \r", "Merging reads 88% \r", "Merging reads 88% \r", "Merging reads 89% \r", "Merging reads 90% \r", "Merging reads 91% \r", "Merging reads 92% \r", "Merging reads 93% \r", "Merging reads 93% \r", "Merging reads 94% \r", "Merging reads 95% \r", "Merging reads 96% \r", "Merging reads 97% \r", "Merging reads 97% \r", "Merging reads 98% \r", "Merging reads 99% \r", "Merging reads 100% \r", "Merging reads 100%\r\n", "18779 read pairs total\r\n", "342 pairs merged (1.8%) and 18437 pairs not merged (98.2%).\r\n" ] } ], "source": [ "%%bash\n", "vsearch-1.9.2-linux-x86_64 \\\n", " --fastq_mergepairs mergetest/mergetest_edits/L20090356_R1_.fastq.gz \\\n", " --reverse mergetest/mergetest_edits/L20090356_R2_.fastq.gz \\\n", " --fastqout_notmerged_fwd test_R1 \\\n", " --fastqout_notmerged_rev test_R2 \\\n", " --fastqout test_merge \\\n", " --fasta_width 0 \\\n", " --fastq_minmergelen 32 \\\n", " --fastq_minovlen 0" ] }, { "cell_type": "code", "execution_count": 11, "metadata": { "collapsed": false }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "vsearch v1.9.2_linux_x86_64, 7.5GB RAM, 4 cores\r\n", "https://github.com/torognes/vsearch\r\n", "\r\n", "Merging reads 0% \r", "Merging reads 1% \r", "Merging reads 2% \r", "Merging reads 2% \r", "Merging reads 3% \r", "Merging reads 4% \r", "Merging reads 5% \r", "Merging reads 6% \r", "Merging reads 7% \r", "Merging reads 7% \r", "Merging reads 8% \r", "Merging reads 9% \r", "Merging reads 10% \r", "Merging reads 11% \r", "Merging reads 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"Merging reads 46% \r", "Merging reads 47% \r", "Merging reads 48% \r", "Merging reads 49% \r", "Merging reads 50% \r", "Merging reads 50% \r", "Merging reads 51% \r", "Merging reads 52% \r", "Merging reads 53% \r", "Merging reads 54% \r", "Merging reads 55% \r", "Merging reads 55% \r", "Merging reads 56% \r", "Merging reads 57% \r", "Merging reads 58% \r", "Merging reads 59% \r", "Merging reads 59% \r", "Merging reads 60% \r", "Merging reads 61% \r", "Merging reads 62% \r", "Merging reads 63% \r", "Merging reads 64% \r", "Merging reads 64% \r", "Merging reads 65% \r", "Merging reads 66% \r", "Merging reads 67% \r", "Merging reads 68% \r", "Merging reads 69% \r", "Merging reads 69% \r", "Merging reads 70% \r", "Merging reads 71% \r", "Merging reads 72% \r", "Merging reads 73% \r", "Merging reads 74% \r", "Merging reads 74% \r", "Merging reads 75% \r", "Merging reads 76% \r", "Merging reads 77% \r", "Merging reads 78% \r", "Merging reads 78% \r", "Merging reads 79% \r", "Merging reads 80% \r", "Merging reads 81% \r", "Merging reads 82% \r", "Merging reads 83% \r", "Merging reads 83% \r", "Merging reads 84% \r", "Merging reads 85% \r", "Merging reads 86% \r", "Merging reads 87% \r", "Merging reads 88% \r", "Merging reads 88% \r", "Merging reads 89% \r", "Merging reads 90% \r", "Merging reads 91% \r", "Merging reads 92% \r", "Merging reads 93% \r", "Merging reads 93% \r", "Merging reads 94% \r", "Merging reads 95% \r", "Merging reads 96% \r", "Merging reads 97% \r", "Merging reads 97% \r", "Merging reads 98% \r", "Merging reads 99% \r", "Merging reads 100% \r", "Merging reads 100%\r\n", "18779 read pairs total\r\n", "342 pairs merged (1.8%) and 18437 pairs not merged (98.2%).\r\n" ] } ], "source": [ "%%bash\n", "vsearch-1.9.2-linux-x86_64 \\\n", " --fastq_mergepairs mergetest/mergetest_edits/L20090356_R1_.fastq.gz \\\n", " --reverse mergetest/mergetest_edits/L20090356_R2_.fastq.gz \\\n", " --fastqout_notmerged_fwd test_R1 \\\n", " --fastqout_notmerged_rev test_R2 \\\n", " --fastqout test_merge \\\n", " --fasta_width 0 \\\n", " --fastq_minmergelen 32 \\\n", " --fastq_minovlen 5" ] }, { "cell_type": "code", "execution_count": 25, "metadata": { "collapsed": false }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "vsearch v1.9.2_linux_x86_64, 7.5GB RAM, 4 cores\r\n", "https://github.com/torognes/vsearch\r\n", "\r\n", "Merging reads 0% \r", "Merging reads 1% \r", "Merging reads 2% \r", "Merging reads 2% \r", "Merging reads 3% \r", "Merging reads 4% \r", "Merging reads 5% \r", "Merging reads 6% \r", "Merging reads 7% \r", "Merging reads 7% \r", "Merging reads 8% \r", "Merging reads 9% \r", "Merging reads 10% \r", "Merging reads 11% \r", "Merging reads 12% \r", "Merging reads 12% \r", "Merging reads 13% \r", "Merging reads 14% \r", "Merging reads 15% \r", "Merging reads 16% \r", "Merging reads 17% \r", "Merging reads 17% \r", "Merging reads 18% \r", "Merging reads 19% \r", "Merging reads 20% \r", "Merging reads 21% \r", "Merging reads 21% \r", "Merging reads 22% \r", "Merging reads 23% \r", "Merging reads 24% \r", "Merging reads 25% \r", "Merging reads 26% \r", "Merging reads 26% \r", "Merging reads 27% \r", "Merging reads 28% \r", "Merging reads 29% \r", "Merging reads 30% \r", "Merging reads 31% \r", "Merging reads 31% \r", "Merging reads 32% \r", "Merging reads 33% \r", "Merging reads 34% \r", "Merging reads 35% \r", "Merging reads 36% \r", "Merging reads 36% \r", "Merging reads 37% \r", "Merging reads 38% \r", "Merging reads 39% \r", "Merging reads 40% \r", "Merging reads 40% \r", "Merging reads 41% \r", "Merging reads 42% \r", "Merging reads 43% \r", "Merging reads 44% \r", "Merging reads 45% \r", "Merging reads 45% \r", "Merging reads 46% \r", "Merging reads 47% \r", "Merging reads 48% \r", "Merging reads 49% \r", "Merging reads 50% \r", "Merging reads 50% \r", "Merging reads 51% \r", "Merging reads 52% \r", "Merging reads 53% \r", "Merging reads 54% \r", "Merging reads 55% \r", "Merging reads 55% \r", "Merging reads 56% \r", "Merging reads 57% \r", "Merging reads 58% \r", "Merging reads 59% \r", "Merging reads 59% \r", "Merging reads 60% \r", "Merging reads 61% \r", "Merging reads 62% \r", "Merging reads 63% \r", "Merging reads 64% \r", "Merging reads 64% \r", "Merging reads 65% \r", "Merging reads 66% \r", "Merging reads 67% \r", "Merging reads 68% \r", "Merging reads 69% \r", "Merging reads 69% \r", "Merging reads 70% \r", "Merging reads 71% \r", "Merging reads 72% \r", "Merging reads 73% \r", "Merging reads 74% \r", "Merging reads 74% \r", "Merging reads 75% \r", "Merging reads 76% \r", "Merging reads 77% \r", "Merging reads 78% \r", "Merging reads 78% \r", "Merging reads 79% \r", "Merging reads 80% \r", "Merging reads 81% \r", "Merging reads 82% \r", "Merging reads 83% \r", "Merging reads 83% \r", "Merging reads 84% \r", "Merging reads 85% \r", "Merging reads 86% \r", "Merging reads 87% \r", "Merging reads 88% \r", "Merging reads 88% \r", "Merging reads 89% \r", "Merging reads 90% \r", "Merging reads 91% \r", "Merging reads 92% \r", "Merging reads 93% \r", "Merging reads 93% \r", "Merging reads 94% \r", "Merging reads 95% \r", "Merging reads 96% \r", "Merging reads 97% \r", "Merging reads 97% \r", "Merging reads 98% \r", "Merging reads 99% \r", "Merging reads 100% \r", "Merging reads 100%\r\n", "18779 read pairs total\r\n", "405 pairs merged (2.2%) and 18374 pairs not merged (97.8%).\r\n" ] } ], "source": [ "%%bash\n", "vsearch-1.9.2-linux-x86_64 \\\n", " --fastq_mergepairs mergetest/mergetest_edits/L20090356_R1_.fastq.gz \\\n", " --reverse mergetest/mergetest_edits/L20090356_R2_.fastq.gz \\\n", " --fastqout_notmerged_fwd test_R1 \\\n", " --fastqout_notmerged_rev test_R2 \\\n", " --fastqout test_merge \\\n", " --fasta_width 0 \\\n", " --fastq_allowmergestagger \\\n", " --fastq_minmergelen 32 " ] }, { "cell_type": "code", "execution_count": 27, "metadata": { "collapsed": false }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "vsearch v1.9.2_linux_x86_64, 7.5GB RAM, 4 cores\r\n", "https://github.com/torognes/vsearch\r\n", "\r\n", "Merging reads 0% \r", "Merging reads 1% \r", "Merging reads 2% \r", "Merging reads 2% \r", "Merging reads 3% \r", "Merging reads 4% \r", "Merging reads 5% \r", "Merging reads 6% \r", "Merging reads 7% \r", "Merging reads 7% \r", "Merging reads 8% \r", "Merging reads 9% \r", "Merging reads 10% \r", "Merging reads 11% \r", "Merging reads 12% \r", "Merging reads 12% \r", "Merging reads 13% \r", "Merging reads 14% \r", "Merging reads 15% \r", "Merging reads 16% \r", "Merging reads 17% \r", "Merging reads 17% \r", "Merging reads 18% \r", "Merging reads 19% \r", "Merging reads 20% \r", "Merging reads 21% \r", "Merging reads 21% \r", "Merging reads 22% \r", "Merging reads 23% \r", "Merging reads 24% \r", "Merging reads 25% \r", "Merging reads 26% \r", "Merging reads 26% \r", "Merging reads 27% \r", "Merging reads 28% \r", "Merging reads 29% \r", "Merging reads 30% \r", "Merging reads 31% \r", "Merging reads 31% \r", "Merging reads 32% \r", "Merging reads 33% \r", "Merging reads 34% \r", "Merging reads 35% \r", "Merging reads 36% \r", "Merging reads 36% \r", "Merging reads 37% \r", "Merging reads 38% \r", "Merging reads 39% \r", "Merging reads 40% \r", "Merging reads 40% \r", "Merging reads 41% \r", "Merging reads 42% \r", "Merging reads 43% \r", "Merging reads 44% \r", "Merging reads 45% \r", "Merging reads 45% \r", "Merging reads 46% \r", "Merging reads 47% \r", "Merging reads 48% \r", "Merging reads 49% \r", "Merging reads 50% \r", "Merging reads 50% \r", "Merging reads 51% \r", "Merging reads 52% \r", "Merging reads 53% \r", "Merging reads 54% \r", "Merging reads 55% \r", "Merging reads 55% \r", "Merging reads 56% \r", "Merging reads 57% \r", "Merging reads 58% \r", "Merging reads 59% \r", "Merging reads 59% \r", "Merging reads 60% \r", "Merging reads 61% \r", "Merging reads 62% \r", "Merging reads 63% \r", "Merging reads 64% \r", "Merging reads 64% \r", "Merging reads 65% \r", "Merging reads 66% \r", "Merging reads 67% \r", "Merging reads 68% \r", "Merging reads 69% \r", "Merging reads 69% \r", "Merging reads 70% \r", "Merging reads 71% \r", "Merging reads 72% \r", "Merging reads 73% \r", "Merging reads 74% \r", "Merging reads 74% \r", "Merging reads 75% \r", "Merging reads 76% \r", "Merging reads 77% \r", "Merging reads 78% \r", "Merging reads 78% \r", "Merging reads 79% \r", "Merging reads 80% \r", "Merging reads 81% \r", "Merging reads 82% \r", "Merging reads 83% \r", "Merging reads 83% \r", "Merging reads 84% \r", "Merging reads 85% \r", "Merging reads 86% \r", "Merging reads 87% \r", "Merging reads 88% \r", "Merging reads 88% \r", "Merging reads 89% \r", "Merging reads 90% \r", "Merging reads 91% \r", "Merging reads 92% \r", "Merging reads 93% \r", "Merging reads 93% \r", "Merging reads 94% \r", "Merging reads 95% \r", "Merging reads 96% \r", "Merging reads 97% \r", "Merging reads 97% \r", "Merging reads 98% \r", "Merging reads 99% \r", "Merging reads 100% \r", "Merging reads 100%\r\n", "18779 read pairs total\r\n", "304 pairs merged (1.6%) and 18475 pairs not merged (98.4%).\r\n" ] } ], "source": [ "%%bash\n", "vsearch-1.9.2-linux-x86_64 \\\n", " --fastq_mergepairs mergetest/mergetest_edits/L20090356_R1_.fastq.gz \\\n", " --reverse mergetest/mergetest_edits/L20090356_R2_.fastq.gz \\\n", " --fastqout_notmerged_fwd test_R1 \\\n", " --fastqout_notmerged_rev test_R2 \\\n", " --fastqout test_merge \\\n", " --fasta_width 0 \\\n", " --fastq_allowmergestagger \\\n", " --fastq_minmergelen 32 \\\n", " --fastq_maxdiffs 10" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": true }, "outputs": [], "source": [ "### Merge pairs from Ron test 0.1.31\n", "@40_19_2536_c1\n", "M = CCTGTCACCATGTCTGCCTTGCCTCCATCACTCACCAACCCCCGCCACCCAACCGTCGTGAGGACTCCCTCCATCCAGCCAGGCTTCGGAACCATCCTCTCCATTGGTGGCGCTCCGTGCTTCACCGTCTTTGTGGCGAGAGCAGTGCTGTCGGCGCCACTGAGGTTGATCTTATTGGTCGGAACTGAAATAGG\n", "R1= CCTGTCACCATGTCTGCCTTGCCTCCATCACTCACCAACCCCCGCCACCCAACCGTCGTGAGGACTCCCTCCATCCAGCCAGGCTTCGGAACCATCCAGTCCAC\n", "R2= ACCATCCTCTCCGTTGGTGGCGCTCCGTGCTTCACCGTCTTTGTGGCGAGAGCAGTGCTGTCGGCGCCACTGAGGTTGATCTTATTGGTCGGAACTGAAATAGG\n", "\n", "M = CGGGACTGTGTCACCATCAGGGAGGAGTTCATCGCTCACAGAAGCAGACCTAACGTCTTCCTACAGCGACTTAACATCCACAACCCATCTGACAGCACTATCTCTCGGTCTTCCAGTTTCTCCACACTGGTGGAGAACTTGCTCCCGAAAGACGGAGTTCCAGAGAAAACATCGAAGGAGGCAGTCCTGTCAG\n", "\n", "M = ACTAACTGGAGATAACTGCTGCTAGCCGCTGCTAGCCTGTGTGTGTCTCCTCGGCTCTCAATCGGCTCTCCAGCCGCCACGCAGTCTCCTTACAGGGCTGCCTCTGAACGGACTGAGTGGCTGGAAACAGCCGCTCAGTATCTCCAGAANCTCGAAGCTCCACAAGCCTAAAGCGCCCTCTTGTGGTTGGCAGTGT\n" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": true }, "outputs": [], "source": [ "GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGBGGGGGGGGGGGGGFGGGGGCGGGGGGGGEGGGGGGGEGGGGGGGGDJJJJJJJ%$JJJ%$GGGGGGGGFGGFGGEGGGGGGGGGGGEGGGEBGGGGEGGGFGGGFGGGGGCGGGGGCDGGGFGEEGGGFGGGGGGGGDGGGGBGGGGAGCGGGEGGGGGJJ$$JJJJJ$JJGGE@GGFDGGGFCFGGGEGGDGGDDGGGGD@GDGGGGGGGG@=BB!<GEEGGGF@FCBGGGGGFC=GCCGGDGGGGGGE\n" ] } ], "metadata": { "kernelspec": { "display_name": "Python 2", "language": "python", "name": "python2" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 2 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython2", "version": "2.7.11" } }, "nbformat": 4, "nbformat_minor": 0 }