orderly.yml
requester: VIMC
author: Katy
displayname: VPD-COVID phase I figures
connection:
con: source
data: ~
packages:
- jenner
- R.utils
- ggplot2
- dplyr
- tidyr
- vimpact
- cowplot
script: script.R
artefacts:
- staticgraph:
description: All figures
filenames:
- deaths_by_year_Measles-1.png
- deaths_by_year_MeningitisA-1.png
- deaths_by_year_YF-1.png
- deaths_by_year_pop_Measles-1.png
- deaths_by_year_pop_MeningitisA-1.png
- deaths_by_year_pop_YF-1.png
- dalys_by_year_pop_Measles-1.png
- dalys_by_year_pop_MeningitisA-1.png
- dalys_by_year_pop_YF-1.png
- dalys_by_year_Measles-1.png
- dalys_by_year_MeningitisA-1.png
- dalys_by_year_YF-1.png
- dalys_by_year_all.png
- excess_deaths_per_pop_by_country-1.png
- excess_dalys_per_pop_by_country-1.png
- under_5s_deaths-1.png
- deaths_by_year_all.png
- deaths_by_year_pop_all.png
- dalys_by_year_pop_all.png
- excess_deaths_by_year_all.png
- excess_deaths_by_year_Measles-1.png
- excess_deaths_by_year_MeningitisA-1.png
- excess_deaths_by_year_YF-1.png
- survival_change_by_year_all.png
- survival_change_by_year_Measles-1.png
- survival_change_by_year_MeningitisA-1.png
- survival_change_by_year_YF-1.png
- deaths_by_year_all_under5.png
- deaths_by_year_Measles_under5-1.png
- deaths_by_year_MeningitisA_under5-1.png
- deaths_by_year_YF_under5-1.png
- excess_deaths_by_year_all_under5.png
- excess_deaths_by_year_Measles_under5-1.png
- excess_deaths_by_year_MeningitisA_under5-1.png
- excess_deaths_by_year_YF_under5-1.png
- norm_deaths_per_country.png
- norm_deaths_per_country_Measles-1.png
- norm_deaths_per_country_MenA-1.png
- norm_deaths_per_country_YF-1.png
- norm_dalys_per_country.png
- norm_dalys_per_country_Measles-1.png
- norm_dalys_per_country_MenA-1.png
- norm_dalys_per_country_YF-1.png
- excess_dalys_per_country_mod.png
- excess_dalys_per_country_mod_Measles-1.png
- excess_dalys_per_country_mod_MenA-1.png
- excess_dalys_per_country_mod_YF-1.png
- excess_deaths_per_country_mod.png
- excess_deaths_per_country_mod_Measles-1.png
- excess_deaths_per_country_mod_MenA-1.png
- excess_deaths_per_country_mod_YF-1.png
- data:
description: All tables
filenames:
- excess_deaths_2020_2030.csv
- excess_dalys_2020_2030.csv
- excess_deaths_under5_2020_2030.csv
- excess_dalys_under5_2020_2030.csv
- excess_dalys_per_pop_2020_2030.csv
- excess_deaths_Measles_country_2000_2030.csv
- excess_deaths_Measles_year_2000_2030.csv
- excess_deaths_Meningitis A_country_2000_2030.csv
- excess_deaths_Meningitis A_year_2000_2030.csv
- excess_deaths_per_pop_2020_2030.csv
- excess_deaths_per_pop_Measles_country_2000_2030.csv
- excess_deaths_per_pop_Measles_year_2000_2030.csv
- excess_deaths_per_pop_Meningitis A_country_2000_2030.csv
- excess_deaths_per_pop_Meningitis A_year_2000_2030.csv
- excess_deaths_per_pop_Yellow fever_country_2000_2030.csv
- excess_deaths_per_pop_Yellow fever_year_2000_2030.csv
- excess_deaths_Yellow fever_country_2000_2030.csv
- excess_deaths_Yellow fever_year_2000_2030.csv
- percent_change_deaths_2020_2030.csv
- percent_change_dalys_2020_2030.csv
- percent_change_deaths_all_2020_2030.csv
- percent_change_dalys_all_2020_2030.csv
sources:
- R/figure_functions.R
- R/table_functions.R
resources:
- country_names.csv
global_resources:
R/disease_palette.R: disease_palette.R
depends:
- vpd-covid-phase-I-impact-estimates:
id: latest
use:
impact.rds: impact.rds