if (requiet("bayestestR") && requiet("testthat") && requiet("blavaan") && requiet("lavaan") && requiet("cmdstanr")) { test_that("blavaan, all", { skip_on_cran() data("PoliticalDemocracy", package = "lavaan") model <- " # latent variable definitions dem60 =~ y1 + a*y2 dem65 =~ y5 + a*y6 # regressions dem65 ~ dem60 # residual correlations y1 ~~ y5 " model2 <- " # latent variable definitions dem60 =~ y1 + a*y2 dem65 =~ y5 + a*y6 # regressions dem65 ~ 0*dem60 # residual correlations y1 ~~ 0*y5 " suppressWarnings(capture.output({ bfit <- blavaan::bsem(model, data = PoliticalDemocracy, n.chains = 1, burnin = 50, sample = 100 ) bfit2 <- blavaan::bsem(model2, data = PoliticalDemocracy, n.chains = 1, burnin = 50, sample = 100 ) })) x <- point_estimate(bfit, centrality = "all", dispersion = TRUE) expect_true(all(c("Median", "MAD", "Mean", "SD", "MAP", "Component") %in% colnames(x))) expect_equal(nrow(x), 14) x <- eti(bfit) expect_equal(nrow(x), 14) x <- hdi(bfit) expect_equal(nrow(x), 14) x <- p_direction(bfit) expect_equal(nrow(x), 14) x <- rope(bfit, range = c(-.1, .1)) expect_equal(nrow(x), 14) x <- p_rope(bfit, range = c(-.1, .1)) expect_equal(nrow(x), 14) x <- p_map(bfit) expect_equal(nrow(x), 14) x <- p_significance(bfit, threshold = c(-.1, .1)) expect_equal(nrow(x), 14) x <- equivalence_test(bfit, range = c(-.1, .1)) expect_equal(nrow(x), 14) x <- estimate_density(bfit) expect_equal(length(unique(x$Parameter)), 14) ## Bayes factors ---- expect_warning(bayesfactor_models(bfit, bfit2)) x <- suppressWarnings(bayesfactor_models(bfit, bfit2)) expect_true(x$log_BF[2] < 0) expect_warning(weighted_posteriors(bfit, bfit2)) x <- suppressWarnings(weighted_posteriors(bfit, bfit2)) expect_equal(ncol(x), 14) # bfit_prior <- unupdate(bfit) # capture.output(x <- expect_warning(bayesfactor_parameters(bfit, prior = bfit_prior))) # expect_equal(nrow(x), 14) # # x <- expect_warning(si(bfit, prior = bfit_prior)) # expect_equal(nrow(x), 14) # # ## Prior/posterior checks ---- # suppressWarnings(x <- check_prior(bfit)) # expect_equal(nrow(x), 13) # # x <- check_prior(bfit, simulate_priors = FALSE) # expect_equal(nrow(x), 14) x <- diagnostic_posterior(bfit) expect_equal(nrow(x), 14) x <- simulate_prior(bfit) expect_equal(ncol(x), 13) # YES this is 13! We have two parameters with the same prior. x <- describe_prior(bfit) expect_equal(nrow(x), 13) # YES this is 13! We have two parameters with the same prior. # x <- describe_posterior(bfit, test = "all", rope_range = c(-.1, .1)) # expect_equal(nrow(x), 14) }) }