/*!
* \file Tomato_test.cpp
* \author Konrad Werys
* \date 2018/08/20
*/
#include "CmakeConfigForTomato.h"
#ifdef USE_ITK
#include "gtest/gtest.h"
#include "Tomato.h"
TEST(ActeptanceTests_TomatoTest, readAndSortFileList) {
Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_fileList.yaml");
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
}
TEST(ActeptanceTests_TomatoTest, readAndSortInputDirs) {
Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_inputDirs.yaml");
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
}
TEST(ActeptanceTests_TomatoTest, readAndSort_calculate) {
Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_fileList.yaml");
Tomato_object._opts->max_function_evals = 5; // to make the calculations faster
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.calculate(), 0); // EXIT_SUCCESS
}
TEST(ActeptanceTests_TomatoTest, readAndSort_calculate_export) {
Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_fileList.yaml");
Tomato_object._opts->max_function_evals = 5; // to make the calculations faster
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.calculate(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.exportToDicom(), 0); // EXIT_SUCCESS
}
#ifdef USE_LMFIT
TEST(ActeptanceTests_TomatoTest, readAndSort_calculate_export_LevMarLmfit) {
Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_fileList.yaml");
Tomato_object._opts->max_function_evals = 5; // to make the calculations faster
Tomato_object._opts->fitting_method = Ox::LevMarLmfit;
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.calculate(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.exportToDicom(), 0); // EXIT_SUCCESS
}
#endif
TEST(ActeptanceTests_TomatoTest, readAndSort_calculate_export_AmoebaVnl) {
Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_fileList.yaml");
Tomato_object._opts->max_function_evals = 5; // to make the calculations faster
Tomato_object._opts->fitting_method = Ox::AmoebaVnl;
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.calculate(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.exportToDicom(), 0); // EXIT_SUCCESS
}
#ifdef USE_PRIVATE_NR2
TEST(ActeptanceTests_TomatoTest, readAndSort_calculate_export_T1_SHMOLLI_original) {
Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_fileList.yaml");
Tomato_object._opts->max_function_evals = 5; // to make the calculations faster
Tomato_object._opts->parameter_to_map = Ox::T1_SHMOLLI_original;
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.calculate(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.exportToDicom(), 0); // EXIT_SUCCESS
}
#endif
TEST(ActeptanceTests_TomatoTest, readAndSort_calculate_incorrect_calculator) {
Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_fileList.yaml");
Tomato_object._opts->parameter_to_map = (Ox::calculatorsType_t)118;
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
EXPECT_THROW(Tomato_object.calculate(), std::runtime_error);
}
TEST(ActeptanceTests_TomatoTest, readAndSort_calculate_export_incorrect_fitter) {
Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_fileList.yaml");
Tomato_object._opts->fitting_method = (Ox::fittersType_t)118;
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
EXPECT_THROW(Tomato_object.calculate(), std::runtime_error);
}
TEST(ActeptanceTests_TomatoTest, readAndSort_calculate_export_incorrect_functions) {
Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_fileList.yaml");
Tomato_object._opts->functions_type = (Ox::functionsType_t)118;
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
EXPECT_THROW(Tomato_object.calculate(), std::runtime_error);
}
TEST(ActeptanceTests_TomatoTest, readAndSort_calculate_export_incorrect_signCalculator) {
Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_fileList.yaml");
Tomato_object._opts->sign_calc_method = (Ox::signCalculatorsType_t)118;
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
EXPECT_THROW(Tomato_object.calculate(), std::runtime_error);
}
TEST(ActeptanceTests_TomatoTest, readAndSort_calculate_export_incorrect_startPointCalulator) {
Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_fileList.yaml");
Tomato_object._opts->start_point_calc_method = (Ox::startPointCalculatorsType_t)118;
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
EXPECT_THROW(Tomato_object.calculate(), std::runtime_error);
}
////TODO: why does it take so long in case of 5 samples, but not 6 or 7 samples
//TEST(ActeptanceTests_TomatoTest, readAndSort_5samples) {
//
// Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_fileList.yaml");
// Tomato_object._opts->files_magnitude.pop_back();
// Tomato_object._opts->files_magnitude.pop_back();
// Tomato_object._opts->files_phase.pop_back();
// Tomato_object._opts->files_phase.pop_back();
// EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
// EXPECT_EQ(Tomato_object.calculate(), 0); // EXIT_SUCCESS
// EXPECT_EQ(Tomato_object.exportToDicom(), 0); // EXIT_SUCCESS
//}
TEST(ActeptanceTests_TomatoTest, readAndSortFileList_calculate_export_noPhase) {
Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_fileList_noPhase.yaml");
Tomato_object._opts->max_function_evals = 5; // to make the calculations faster
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.calculate(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.exportToDicom(), 0); // EXIT_SUCCESS
}
TEST(ActeptanceTests_TomatoTest, readAndSortInputDirs_calculate_export_noPhase) {
Ox::Tomato<double> Tomato_object("testData/Hcmr_Phantom_1916_Shmolli_192i_e11_inputDirs_noPhase.yaml");
Tomato_object._opts->max_function_evals = 5; // to make the calculations faster
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.calculate(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.exportToDicom(), 0); // EXIT_SUCCESS
}
#ifdef USE_PRIVATE_NR2
TEST(ActeptanceTests_TomatoTest, readAndSortInputDirs_calculate_export_Philips) {
Ox::Tomato<double> Tomato_object("testData/026_Hcmr_Phantom_Leeds_20131216_DAB_fileList.yaml");
Tomato_object._opts->max_function_evals = 5; // to make the calculations faster
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.calculate(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.exportToDicom(), 0); // EXIT_SUCCESS
}
#endif //USE_PRIVATE_NR2
#ifdef USE_PRIVATE_NR2
TEST(ActeptanceTests_TomatoTest, readAndSortInputDirs_calculate_export_GE) {
Ox::Tomato<double> Tomato_object("testData/039-Hcmr_Phantom_Erasmus_fileList.yaml");
Tomato_object._opts->max_function_evals = 5; // to make the calculations faster
EXPECT_EQ(Tomato_object.readAndSort(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.calculate(), 0); // EXIT_SUCCESS
EXPECT_EQ(Tomato_object.exportToDicom(), 0); // EXIT_SUCCESS
}
#endif //USE_PRIVATE_NR2
#endif // USE_ITK