Skip to main content
swh:1:snp:8c426de7c1a52fbd96f065cdced641b6f2bc8788
Raw File Download
Tip revision: c8b8c79b2ec9c1bd9eb7ced427bb2aec25f19506 authored by Benjamin Emert on 26 March 2020, 17:37:11 UTC
Updated reorganizeBasespaceFiles.py to better parse samples with same first index (e.g. sample 1 and sample10)
Tip revision: c8b8c79
submitUnzipAndCat.sh 
#!/bin/bash

# The first input is the location of the raw data - this should be the location of your data.
# The second/final input is the destination - this should be your experiment folder.

$codeHomeDir/rajlabseqtools/Utilities/stepOneSetUp/unzipAndConcatenateZippedFastq.sh $RAWDATA_DIRECTORY /project/arjunrajlab/$PROJECT/repo/$EXPERIMENT $PAIRED_OR_SINGLE_END_FRAGMENTS