# Copyright 2017 the GPflow authors. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License.from __future__ import print_function import tensorflow as tf import numpy as np from numpy.testing import assert_almost_equal, assert_allclose import gpflow from gpflow.test_util import GPflowTestCase from gpflow.core import AutoFlow class DumbModel(gpflow.models.Model): def __init__(self): gpflow.models.Model.__init__(self) self.a = gpflow.Param(3.) @gpflow.params_as_tensors def _build_likelihood(self): return -tf.square(self.a) class NoArgsModel(DumbModel): @gpflow.autoflow() @gpflow.params_as_tensors def function1(self): return self.a @gpflow.autoflow() @gpflow.params_as_tensors def function2(self): return self.a + 1.0 class TestNoArgs(GPflowTestCase): def test_autoflow_functioning(self): with self.test_context(): m = NoArgsModel() m.compile() def get_keys(): return [k for k in m.__dict__ if k.startswith(AutoFlow.__autoflow_prefix__)] names = [m.function1.__name__, m.function2.__name__] names = [AutoFlow.__autoflow_prefix__ + name for name in names] first_key = names[0] second_key = names[1] assert_allclose(m.function1(), 3.) assert_allclose(m.function2(), 4.) self.assertEqual(len(get_keys()), 2) AutoFlow.clear_autoflow(m, name=first_key) self.assertEqual(len(get_keys()), 1) assert_allclose(m.function1(), 3.) self.assertEqual(len(get_keys()), 2) AutoFlow.clear_autoflow(m, name=second_key) self.assertEqual(len(get_keys()), 1) assert_allclose(m.function2(), 4.) self.assertEqual(len(get_keys()), 2) AutoFlow.clear_autoflow(m, name=first_key) AutoFlow.clear_autoflow(m, name=second_key) self.assertEqual(len(get_keys()), 0) assert_allclose(m.function1(), 3.) assert_allclose(m.function2(), 4.) self.assertEqual(len(get_keys()), 2) AutoFlow.clear_autoflow(m) self.assertEqual(len(get_keys()), 0) class AddModel(DumbModel): @gpflow.autoflow((tf.float64,), (tf.float64,)) @gpflow.params_as_tensors def add(self, x, y): return tf.add(x, y) class TestShareArgs(GPflowTestCase): """ This is designed to replicate bug #85, where having two models caused autoflow functions to fail because the tf_args were shared over the instances. """ def setUp(self): with self.test_context(): self.m1 = AddModel() self.m2 = AddModel() def test_share_args(self): with self.test_context(): rng = np.random.RandomState(0) x = rng.randn(10, 20) y = rng.randn(10, 20) ans = x + y self.m1.add(x, y) self.m2.add(x, y) assert_almost_equal(self.m1.add(x, y), ans) assert_almost_equal(self.m2.add(x, y), ans) assert_almost_equal(self.m1.add(y, x), ans) class IncrementModel(DumbModel): def __init__(self): DumbModel.__init__(self) self.b = gpflow.DataHolder(np.array([3.])) @gpflow.autoflow((tf.float64,)) @gpflow.params_as_tensors def inc(self, x): return x + self.b class TestDataHolder(GPflowTestCase): def test_add(self): with self.test_context(): m = IncrementModel() x = np.random.randn(10, 20) m.compile() assert_almost_equal(x + m.a.read_value(), m.inc(x)) class TestGPmodel(GPflowTestCase): def prepare(self): rng = np.random.RandomState(0) X, Y = rng.randn(2, 10, 1) m = gpflow.models.SVGP(X, Y, kern=gpflow.kernels.Matern32(1), likelihood=gpflow.likelihoods.StudentT(), Z=X[::2].copy()) m.compile() xnew = np.random.randn(100, 1) ynew = np.random.randn(100, 1) return m, xnew, ynew def test_predict_f(self): with self.test_context(): m, x, _y = self.prepare() _mu, _var = m.predict_f(x) def test_predict_y(self): with self.test_context(): m, x, _y = self.prepare() _mu, _var = m.predict_y(x) def test_predict_density(self): with self.test_context(): m, x, y = self.prepare() m.predict_density(x, y) def test_multiple_AFs(self): with self.test_context(): m, _x, _y = self.prepare() m.compute_log_likelihood() m.compute_log_prior() m.compute_log_likelihood() class TestFixAndPredict(GPflowTestCase): """ Bug #54 says that if a model parameter is fixed between calls to predict (an autoflow fn) then the second call fails. This test ensures replicates that and ensures that the bugfix remains in furure. """ def prepare(self): rng = np.random.RandomState(0) X, Y = rng.randn(2, 10, 1) m = gpflow.models.SVGP(X, Y, kern=gpflow.kernels.Matern32(1), likelihood=gpflow.likelihoods.StudentT(), Z=X[::2].copy()) xtest = np.random.randn(100, 1) ytest = np.random.randn(100, 1) return m, xtest, ytest def test(self): with self.test_context(): m, x, y = self.prepare() m.compile() m.kern.variance.trainable = False _, _ = m.predict_f(m.X.read_value()) class TestSVGP(GPflowTestCase): """ This replicates Alex's code from bug #99 """ def test(self): rng = np.random.RandomState(1) X = rng.randn(10, 1) Y = rng.randn(10, 1) Z = rng.randn(3, 1) model = gpflow.models.SVGP( X=X, Y=Y, kern=gpflow.kernels.RBF(1), likelihood=gpflow.likelihoods.Gaussian(), Z=Z) model.compile() model.compute_log_likelihood() if __name__ == '__main__': tf.test.main()