# # # fv.R # # class "fv" of function value objects # # $Revision: 1.23 $ $Date: 2007/10/24 09:41:08 $ # # # An "fv" object represents one or more related functions # of the same argument, such as different estimates of the K function. # # It is a data.frame with additional attributes # # argu column name of the function argument (typically "r") # # valu column name of the recommended function # # ylab generic label for y axis e.g. K(r) # # fmla default plot formula # # alim recommended range of function argument # # labl recommended xlab/ylab for each column # # desc longer description for each column # # unitname name of unit of length for 'r' # # Objects of this class are returned by Kest(), etc # ################################################################## # creator fv <- function(x, argu="r", ylab=NULL, valu, fmla=NULL, alim=NULL, labl=names(x), desc=NULL, unitname=NULL) { stopifnot(is.data.frame(x)) # check arguments stopifnot(is.character(argu)) if(!is.null(ylab)) stopifnot(is.character(ylab) || is.language(ylab)) stopifnot(is.character(valu)) if(!(argu %in% names(x))) stop(paste(sQuote("argu"), "must be the name of a column of x")) if(!(valu %in% names(x))) stop(paste(sQuote("valu"), "must be the name of a column of x")) if(is.null(fmla)) fmla <- as.formula(paste(valu, "~", argu)) else if(!inherits(fmla, "formula") && !is.character(fmla)) stop(paste(sQuote("fmla"), "should be a formula or a string")) # convert to string fmla <- deparse(fmla) if(is.null(alim)) { argue <- x[[argu]] xlim <- range(argue[is.finite(argue)], na.rm=TRUE) } if(!is.numeric(alim) || length(alim) != 2) stop(paste(sQuote("alim"), "should be a vector of length 2")) if(!is.character(labl)) stop(paste(sQuote("labl"), "should be a vector of strings")) stopifnot(length(labl) == ncol(x)) if(is.null(desc)) desc <- character(ncol(x)) else { stopifnot(is.character(desc)) stopifnot(length(desc) == ncol(x)) nbg <- is.na(desc) if(any(nbg)) desc[nbg] <- "" } # pack attributes attr(x, "argu") <- argu attr(x, "valu") <- valu attr(x, "ylab") <- ylab attr(x, "fmla") <- fmla attr(x, "alim") <- alim attr(x, "labl") <- labl attr(x, "desc") <- desc attr(x, "units") <- as.units(unitname) # class(x) <- c("fv", class(x)) return(x) } is.fv <- function(x) { inherits(x, "fv") } as.fv <- function(x) { if(is.fv(x)) return(x) else if(inherits(x, "data.frame")) return(fv(x, names(x)[1], , names(x)[2])) else if(inherits(x, "fasp") && length(which) == 1) return(x$funs[[1]]) else stop(paste("Don't know how to convert this to an object of class", sQuote("fv"))) } print.fv <- function(x, ...) { verifyclass(x, "fv") nama <- names(x) a <- attributes(x) cat(paste("Function value object (class ", sQuote("fv"), ")\n", sep="")) if(!is.null(ylab <- a$ylab)) { if(is.language(ylab)) ylab <- deparse(ylab) cat(paste("for the function", a$argu, "->", ylab, "\n")) } cat("Entries:\n") len <- nchar(a$labl) tabjump <- max(c(len, 5)) + 3 pad <- function(n) { paste(character(n),collapse=" ") } cat("id\tlabel", pad(tabjump - 5), "description\n", sep="") cat("--\t-----", pad(tabjump - 5), "-----------\n", sep="") for(j in seq(ncol(x))) cat(paste(nama[j],"\t", a$labl[j],pad(tabjump - len[j]), a$desc[j],"\n", sep="")) cat("--------------------------------------\n\n") cat("Default plot formula:\n\t") print.formula(as.formula(a$fmla)) alim <- signif(a$alim, 5) cat(paste("\nRecommended range of argument ", a$argu, ": [", alim[1], ", ", alim[2], "]\n", sep="")) ledge <- summary(unitname(x))$legend if(!is.null(ledge)) cat(paste(ledge, "\n")) invisible(NULL) } bind.fv <- function(x, y, labl, desc, preferred) { verifyclass(x, "fv") y <- as.data.frame(y) a <- attributes(x) if(length(labl) != ncol(y)) stop(paste("length of", sQuote("labl"), "does not match number of columns of y")) if(missing(desc) || is.null(desc)) desc <- character(ncol(y)) else if(length(desc) != ncol(y)) stop(paste("length of", sQuote("desc"), "does not match number of columns of y")) if(missing(preferred)) preferred <- a$valu xy <- cbind(as.data.frame(x), y) z <- fv(xy, a$argu, a$ylab, preferred, a$fmla, a$alim, c(attr(x, "labl"), labl), c(attr(x, "desc"), desc), unitname=unitname(a)) return(z) } "[.fv" <- subset.fv <- function(x, i, j, ..., drop=FALSE) { Nindices <- (!missing(i)) + (!missing(j)) if(Nindices == 0) return(x) y <- as.data.frame(x) if(Nindices == 2) z <- y[i, j, drop=FALSE] else if(!missing(i)) z <- y[i, , drop=FALSE] else z <- y[ , j, drop=FALSE] if(missing(j)) selected <- seq(ncol(x)) else { nameindices <- seq(names(x)) names(nameindices) <- names(x) selected <- as.vector(nameindices[j]) } nama <- names(z) argu <- attr(x, "argu") if(!(argu %in% nama)) stop(paste("The function argument", sQuote(argu), "must not be removed")) valu <- attr(x, "valu") if(!(valu %in% nama)) stop(paste("The default column of function values", sQuote(valu), "must not be removed")) # If range of argument was implicitly changed, adjust "alim" alim <- attr(x, "alim") rang <- range(z[[argu]]) alim <- c(max(alim[1], rang[1]), min(alim[2], rang[2])) return(fv(z, argu=attr(x, "argu"), ylab=attr(x, "ylab"), valu=attr(x, "valu"), fmla=attr(x, "fmla"), alim=alim, labl=attr(x, "labl")[selected], desc=attr(x, "desc")[selected], unitname=attr(x, "units"))) }