https://github.com/ctlab/phantasus
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Tip revision: 7860af3a5537decc933cb79381a493ad62537499 authored by Alexey Sergushichev on 02 June 2018, 09:13 UTC
JS: fixed double createES for TCGA data
Tip revision: 7860af3
.travis.yml
language: r
r:
    #- bioc-devel
  - bioc-release
# warnings_are_errors: true
sudo: false
cache: packages

services:
  - docker

addons:
  apt:
    packages:
      - libprotobuf-dev
      - libapparmor-dev
      - protobuf-compiler
      - libcurl4-openssl-dev

r_packages:
  - covr
  - data.table
  - ggplot2
  - testthat
  - knitr
  - rmarkdown
  - httpuv
  - opencpu
  - protolite
  - Rook

os:
  - linux
  - osx

bioc_required: true
bioc_packages:
  - BiocCheck
  - GEOquery
  - limma
  - rhdf5
  - BiocStyle

before_install:
  - if [ ${TRAVIS_OS_NAME} = 'osx' ]; then brew unlink python; brew install protobuf; fi
  - R -e 'install.packages("devtools")'
  - R -e 'source("https://bioconductor.org/biocLite.R"); biocLite()'

script:
  - R CMD build .
  - FILE=$(ls -1t *.tar.gz | head -n 1)
  - R CMD check "$FILE"
  - bash inst/test_js.sh

after_script:
  - FILE=$(ls -1t *.tar.gz | head -n 1)
  - Rscript -e "library(BiocCheck); BiocCheck(\"${FILE}\")"

after_success:
  - Rscript -e 'covr::codecov()'
  - if [ "$TRAVIS_OS_NAME" == "linux" ] && [ "$TRAVIS_BRANCH" == "master" ]; then
    docker login -u="$DOCKER_USERNAME" -p="$DOCKER_PASSWORD";
    docker build -t dzenkova/phantasus inst/docker/latest/ ;
    DOCKER_TAG="travis-$TRAVIS_BUILD_NUMBER" ;
    docker tag dzenkova/phantasus dzenkova/phantasus:$DOCKER_TAG ;
    docker push dzenkova/phantasus;
    fi
  - if [ "$TRAVIS_OS_NAME" == "linux" ] && [ "$TRAVIS_BRANCH" == "develop" ]; then
    docker login -u="$DOCKER_USERNAME" -p="$DOCKER_PASSWORD";
    docker build -t dzenkova/phantasus:develop inst/docker/develop/ ;
    docker push dzenkova/phantasus:develop;
    fi

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