https://github.com/ekg/freebayes
Tip revision: 9755e43db74f9fa8ad2653d6a771d7a8d148ee66 authored by Erik Garrison on 10 December 2013, 00:24:08 UTC
Setting Release-Version v0.9.10
Setting Release-Version v0.9.10
Tip revision: 9755e43
dummy.cpp
// alleles.cpp
// outputs a json-formatted stream of alleles over target regions
//
// Erik Garrison <erik.garrison@bc.edu>
// Marth Lab, Boston College
// July 14, 2010
//
// standard includes
//#include <cstdio>
#include <iostream>
#include <fstream>
#include <string>
#include <vector>
#include <map>
#include <iterator>
#include <algorithm>
#include <cmath>
#include <time.h>
// private libraries
#include "BamReader.h"
#include "Fasta.h"
#include "TryCatch.h"
#include "Parameters.h"
#include "Allele.h"
#include "AlleleParser.h"
#include "multichoose.h"
#include "multipermute.h"
using namespace std;
AlleleFreeList Allele::_freeList;
int main (int argc, char *argv[]) {
AlleleParser* parser = new AlleleParser(argc, argv);
while (parser->dummyProcessNextTarget()) {
}
delete parser;
return 0;
}