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Tip revision: cf8e5559808b24cdcb78eaf0dd1ec95238c38381 authored by Vladislav Kamenev on 29 October 2018, 14:31:24 UTC
Updated tutorial
Tip revision: cf8e555
getES.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/loadGEO.R
\name{getES}
\alias{getES}
\title{Load ExpressionSet by GEO identifier}
\usage{
getES(name, type = NA, destdir = tempdir(),
  mirrorPath = "https://ftp.ncbi.nlm.nih.gov")
}
\arguments{
\item{name}{String, containing GEO identifier of the dataset.
It should start with 'GSE' or 'GDS' and can include exact GPL
to annotate dataset, separated with dash ('-') from the identifier.}

\item{type}{Type of the dataset: 'GSE' or 'GDS'. If not specified,
the function will take first three letters
of \code{name} variable as type.}

\item{destdir}{Directory for caching loaded Series and GPL
files from GEO database.}

\item{mirrorPath}{URL string which specifies the source of matrices.}
}
\value{
List of ExpressionSet objects, that were available by given
    in \code{name} variable GEO identifier.
}
\description{
\code{getES} return the ExpressionSet object(s) corresponding
    to GEO identifier.
}
\examples{
\dontrun{
    getES('GSE14308', type = 'GSE', destdir = 'cache')
    getES('GSE27112')
}
getES('GDS4922')

}
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