#!/usr/bin/env python # # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ # # # # CitcomS.py by Eh Tan, Eun-seo Choi, and Pururav Thoutireddy. # Copyright (C) 2002-2005, California Institute of Technology. # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA # # # # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ '''Automatically find the input parameters from CitcomS input file and run 'batchcombine.py' usage: autocombine.py machinefile inputfile step1 [step2 [...] ] ''' # default values for CitcomS input defaults = {'output_format': 'ascii', 'output_optional': 'surf,botm', 'buoy_type': 1, 'tracer_flavors': 2, 'nprocx': 1, 'nprocy': 1, 'nprocz': 1, 'nodex': 9, 'nodey': 9, 'nodez': 9} def normalize_optional(output_optional): fields = [] for opt in output_optional.split(','): ## remove the leading/trailing whitespaces opt = opt.strip() ## retain fields that are node-based if opt in ('pressure', 'stress', 'comp_nd'): fields.append(opt) return ','.join(fields) if __name__ == '__main__': import sys import batchcombine as bc if len(sys.argv) < 4: print __doc__ sys.exit(1) machinefile = sys.argv[1] inputfile = sys.argv[2] timesteps = [int(i) for i in sys.argv[3:]] # parse input from parser import Parser parser = Parser(defaults) parser.read(inputfile) datadir = parser.getstr('datadir') datafile = parser.getstr('datafile') output_format = parser.getstr('output_format') if output_format != 'ascii': print "Error: don't know how to combine the output", \ "(output_format=%s)" % output_format sys.exit(1) output_optional = parser.getstr('output_optional') optional_fields = normalize_optional(output_optional) buoy_type = parser.getint('buoy_type') nflavors = parser.getint('tracer_flavors') if buoy_type == 0: ncompositions = nflavors elif buoy_type == 1: ncompositions = nflavors - 1 else: print "Error: don't know how to combine the output", \ "(buoy_type=%d)" % buoy_type sys.exit(1) nodex = parser.getint('nodex') nodey = parser.getint('nodey') nodez = parser.getint('nodez') ncap = parser.getint('nproc_surf') nprocx = parser.getint('nprocx') nprocy = parser.getint('nprocy') nprocz = parser.getint('nprocz') totalnodes = nprocx * nprocy * nprocz * ncap nodelist = bc.machinefile2nodelist(machinefile, totalnodes) for timestep in timesteps: # combining coord, velo, temp, and visc bc.batchcombine(nodelist, datadir, datafile, timestep, nodex, nodey, nodez, ncap, nprocx, nprocy, nprocz, 'coord,velo,visc', 0) # combining optional fields, if necessary if optional_fields: bc.batchcombine(nodelist, datadir, datafile, timestep, nodex, nodey, nodez, ncap, nprocx, nprocy, nprocz, optional_fields, ncompositions) # version # $Id$ # End of file