# nndist.R # Check that nndist and nnwhich give # results consistent with direct calculation from pairdist require(spatstat) eps <- sqrt(.Machine$double.eps) f <- function(mat,k) { apply(mat, 1, function(z,n) { sort(z)[n] }, n=k+1) } g <- function(mat,k) { apply(mat, 1, function(z,n) { order(z)[n] }, n=k+1) } # Two dimensions X <- runifpoint(42) nn <- nndist(X) nnP <- f(pairdist(X), 1) if(any(abs(nn - nnP) > eps)) stop("nndist.ppp does not agree with pairdist") nn5 <- nndist(X, k=5) nn5P <- f(pairdist(X), 5) if(any(abs(nn5 - nn5P) > eps)) stop("nndist.ppp(k=5) does not agree with pairdist") nw <- nnwhich(X) nwP <- g(pairdist(X), 1) if(any(nw != nwP)) stop("nnwhich.ppp does not agree with pairdist") nw5 <- nnwhich(X, k=5) nw5P <- g(pairdist(X), 5) if(any(nw5 != nw5P)) stop("nnwhich.ppp(k=5) does not agree with pairdist") # Three dimensions X <- runifpoint3(42) nn <- nndist(X) nnP <- f(pairdist(X), 1) if(any(abs(nn - nnP) > eps)) stop("nndist.pp3 does not agree with pairdist") nn5 <- nndist(X, k=5) nn5P <- f(pairdist(X), 5) if(any(abs(nn5 - nn5P) > eps)) stop("nndist.pp3(k=5) does not agree with pairdist") nw <- nnwhich(X) nwP <- g(pairdist(X), 1) if(any(nw != nwP)) stop("nnwhich.pp3 does not agree with pairdist") nw5 <- nnwhich(X, k=5) nw5P <- g(pairdist(X), 5) if(any(nw5 != nw5P)) stop("nnwhich.pp3(k=5) does not agree with pairdist") # m dimensions X <- runifpointx(42, boxx(c(0,1),c(0,1),c(0,1),c(0,1))) nn <- nndist(X) nnP <- f(pairdist(X), 1) if(any(abs(nn - nnP) > eps)) stop("nndist.ppx does not agree with pairdist") nn5 <- nndist(X, k=5) nn5P <- f(pairdist(X), 5) if(any(abs(nn5 - nn5P) > eps)) stop("nndist.ppx(k=5) does not agree with pairdist") nw <- nnwhich(X) nwP <- g(pairdist(X), 1) if(any(nw != nwP)) stop("nnwhich.ppx does not agree with pairdist") nw5 <- nnwhich(X, k=5) nw5P <- g(pairdist(X), 5) if(any(nw5 != nw5P)) stop("nnwhich.ppx(k=5) does not agree with pairdist")