https://github.com/pjdiebold/OIL-PCR_Linking_plasmid-based_beta-lactamases
Tip revision: 6d5b25dfa6d67703f06f74c24f7efe27bcf9d8dd authored by pjdiebold on 15 June 2021, 20:27:54 UTC
Update README.md
Update README.md
Tip revision: 6d5b25d
make_romb_genome_db_make.sh
#!/bin/bash
export PATH=/programs/ncbi-blast-2.9.0+/bin:$PATH
WRK=/workdir/users/pd378/oilPCR/bulk_process_all_OIL_for_paper
FASTA=/workdir/users/pd378/oilPCR/bulk_process_all_OIL_for_paper/aligning_romboutsia_scaffolds/amphora/genomes/Romb_db/Romboutsia.fasta
OUT=$WRK/aligning_romboutsia_scaffolds/blast_db
cd $OUT
makeblastdb -in $FASTA -dbtype nucl -parse_seqids
