Skip to main content
  • Home
  • Development
  • Documentation
  • Donate
  • Operational login
  • Browse the archive

swh logo
SoftwareHeritage
Software
Heritage
Archive
Features
  • Search

  • Downloads

  • Save code now

  • Add forge now

  • Help

Raw File Download

To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

  • content
content badge
swh:1:cnt:a36ffb460164e21e1a2ae9563483fdd00d4eb7d4

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

  • content
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
% Figure_6S1_Generate.m
% Script used to generate Figure 6 -- Supplemental Figure 1 
% from Barendregt et al., 2022.

clear

% Load subject and MCMC data:
load('trials.mat'); subs = 20; speeds = 2;
load('model_fit_NB.mat');
load('model_fit_Const.mat');
load('model_fit_UGM.mat');

% Define parameters to simulate models:
Nt = 15;

% Format data from NB model:
NB = model_fit_NB(:);
model_AICc = NaN(1,length(NB));

% Find best-fit and worst-fit NB model:
for i = 1:length(NB)
    model_AICc(i) = NB(i).AICc;
end
[~,m] = min(model_AICc); [~,M] = max(model_AICc);

% Plot best-fit model and associated subject data:
Sub_ID = NB(m).idSubject;
speed = NB(m).speed; t_d = speed/1000;
Sub_T = trials.nDecisionToken((trials.nSpeedFast == speed) & (trials.idSubject == Sub_ID));
Sub_Data = histcounts(Sub_T,-0.5:1:(Nt+0.5),'normalization','probability');
figure
stairs(-0.5:Nt+0.5,[Sub_Data 0],'k','linewidth',15)
hold on; xlim([0 Nt])
stairs(-0.5:Nt+0.5,[NB(m).Fit 0],'linewidth',15,'color','#1b9e77');

% Display KL divergence between subject data and fitted model:
disp(KL(Sub_Data,NB(m).Fit))

% Plot worst-fit model and associated subject data:
Sub_ID = NB(M).idSubject;
speed = NB(M).speed; t_d = speed/1000;
Sub_T = trials.nDecisionToken((trials.nSpeedFast == speed) & (trials.idSubject == Sub_ID));
Sub_Data = histcounts(Sub_T,-0.5:1:(Nt+0.5),'normalization','probability');
figure
stairs(-0.5:Nt+0.5,[Sub_Data 0],'k','linewidth',15)
hold on; xlim([0 Nt])
stairs(-0.5:Nt+0.5,[NB(M).Fit 0],'linewidth',15,'color','#1b9e77');

% Display KL divergence between subject data and fitted model:
disp(KL(Sub_Data,NB(M).Fit))

% Format data from Const model:
Const = model_fit_Const(:);
model_AICc = NaN(1,length(Const));

% Find best-fit and worst-fit Const model:
for i = 1:length(Const)
    model_AICc(i) = Const(i).AICc;
end
[~,m] = min(model_AICc); [~,M] = max(model_AICc);

% Plot best-fit model and associated subject data:
Sub_ID = Const(m).idSubject;
speed = Const(m).speed; t_d = speed/1000;
Sub_T = trials.nDecisionToken((trials.nSpeedFast == speed) & (trials.idSubject == Sub_ID));
Sub_Data = histcounts(Sub_T,-0.5:1:(Nt+0.5),'normalization','probability');
figure
stairs(-0.5:Nt+0.5,[Sub_Data 0],'k','linewidth',15)
hold on; xlim([0 Nt])
stairs(-0.5:Nt+0.5,[Const(m).Fit 0],'linewidth',15,'color','#d95f02');

% Display KL divergence between subject data and fitted model:
disp(KL(Sub_Data,Const(m).Fit))

% Plot worst-fit model and associated subject data:
Sub_ID = Const(M).idSubject;
speed = Const(M).speed; t_d = speed/1000;
Sub_T = trials.nDecisionToken((trials.nSpeedFast == speed) & (trials.idSubject == Sub_ID));
Sub_Data = histcounts(Sub_T,-0.5:1:(Nt+0.5),'normalization','probability');
figure
stairs(-0.5:Nt+0.5,[Sub_Data 0],'k','linewidth',15)
hold on; xlim([0 Nt])
stairs(-0.5:Nt+0.5,[Const(M).Fit 0],'linewidth',15,'color','#d95f02');

% Display KL divergence between subject data and fitted model:
disp(KL(Sub_Data,Const(M).Fit))

% Format data from UGM:
UGM = model_fit_UGM(:);
model_AICc = NaN(1,length(UGM));

% Find best-fit and worst-fit UGM:
for i = 1:length(UGM)
    model_AICc(i) = UGM(i).AICc;
end
[~,m] = min(model_AICc); [~,M] = max(model_AICc);

% Plot best-fit model and associated subject data:
Sub_ID = UGM(m).idSubject;
speed = UGM(m).speed; t_d = speed/1000;
Sub_T = trials.nDecisionToken((trials.nSpeedFast == speed) & (trials.idSubject == Sub_ID));
Sub_Data = histcounts(Sub_T,-0.5:1:(Nt+0.5),'normalization','probability');
figure
stairs(-0.5:Nt+0.5,[Sub_Data 0],'k','linewidth',15)
hold on; xlim([0 Nt])
stairs(-0.5:Nt+0.5,[UGM(m).Fit 0],'linewidth',15,'color','#7570b3');

% Display KL divergence between subject data and fitted model:
disp(KL(Sub_Data,UGM(m).Fit))

% Plot worst-fit model and associated subject data:
Sub_ID = UGM(M).idSubject;
speed = UGM(M).speed; t_d = speed/1000;
Sub_T = trials.nDecisionToken((trials.nSpeedFast == speed) & (trials.idSubject == Sub_ID));
Sub_Data = histcounts(Sub_T,-0.5:1:(Nt+0.5),'normalization','probability');
figure
stairs(-0.5:Nt+0.5,[Sub_Data 0],'k','linewidth',15)
hold on; xlim([0 Nt])
stairs(-0.5:Nt+0.5,[UGM(M).Fit 0],'linewidth',15,'color','#7570b3');

% Display KL divergence between subject data and fitted model:
disp(KL(Sub_Data,UGM(M).Fit))

back to top

Software Heritage — Copyright (C) 2015–2025, The Software Heritage developers. License: GNU AGPLv3+.
The source code of Software Heritage itself is available on our development forge.
The source code files archived by Software Heritage are available under their own copyright and licenses.
Terms of use: Archive access, API— Content policy— Contact— JavaScript license information— Web API