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Tip revision: a010582c8df9b28958e7447ae37bfca886c457de authored by Mikhail Kolmogorov on 18 March 2015, 01:59:36 UTC
non-negative tree lengths, dosumentationimproved
Tip revision: a010582

#(c) 2013-2015 by Authors
#This file is a part of Ragout program.
#Released under the BSD license (see LICENSE file)

This script converts synteny blocks file from Ragout internal format
to one that MLGO recognizes

from __future__ import print_function
import sys
from collections import defaultdict

def main():
    if len(sys.argv) != 2:
        print("Usage: genome_permutations")
        return 1

    filename = sys.argv[1]
    blocks = defaultdict(list)
    with open(filename, "r") as f:
        while True:
            name_str = f.readline().strip()
            if not name_str:

            blocks_str = f.readline().strip()

    for genome, seqs in blocks.items():
        for seq in seqs:

    return 0

if __name__ == "__main__":
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