#!/bin/sh # Usage: ./run_reports.sh [--sync-config] # # # Description: This script can be used to start or stop the galaxy # reports web application. Passing in --sync-config as the first # argument to this will cause Galaxy's database and path parameters # from galaxy.ini to be copied over into reports.ini. cd "$(dirname "$0")" GALAXY_REPORTS_PID=${GALAXY_REPORTS_PID:-reports_webapp.pid} GALAXY_REPORTS_LOG=${GALAXY_REPORTS_LOG:-reports_webapp.log} PID_FILE=$GALAXY_REPORTS_PID LOG_FILE=$GALAXY_REPORTS_LOG . ./scripts/common_startup_functions.sh if [ "$1" = "--sync-config" ]; then python ./scripts/sync_reports_config.py shift fi parse_common_args $@ run_common_start_up setup_python if [ -z "$GALAXY_REPORTS_CONFIG" ]; then GALAXY_REPORTS_CONFIG=$(PYTHONPATH=lib python -c "from __future__ import print_function; from galaxy.util.properties import find_config_file; print(find_config_file(['reports', 'reports_wsgi']) or '')") export GALAXY_REPORTS_CONFIG fi find_server ${GALAXY_REPORTS_CONFIG:-none} reports if [ "$run_server" = "gunicorn" -a -z "$GALAXY_REPORTS_CONFIG" ]; then GALAXY_REPORTS_CONFIG="config/reports.yml.sample" export GALAXY_REPORTS_CONFIG echo 'WARNING: Using default reports config at config/reports.yml.sample, copy to config/reports.yml or set $GALAXY_REPORTS_CONFIG if this is not intentional' fi echo "Executing: $run_server $server_args" eval $run_server $server_args