https://github.com/tom-n-walker/uphill-plants-soil-carbon
Tip revision: 05e1672664e587a3808d326d6f78d29ca5e44c01 authored by Tom Walker on 07 September 2021, 14:31:53 UTC
Added all analyses, streamlined pipelines and improved statistical models. Removed data export (all done via drake cache).
Added all analyses, streamlined pipelines and improved statistical models. Removed data export (all done via drake cache).
Tip revision: 05e1672
drake_plan.R
################################################################################
#### Project: SNF field experiment
#### Title: Drake plan
#### Author: Tom Walker (thomas.walker@usys.ethz.ch)
#### Date: 26 March 2021
#### ---------------------------------------------------------------------------
#### PROLOGUE ------------------------------------------------------------------
## Options ----
# remove objects from global environment
rm(list = ls())
# configure default R session options (no factors, bias against scientific #s)
options(stringsAsFactors = F,
scipen = 6)
## Libraries ----
source("packages.r")
## Code ----
sapply(list.files("./r_code",full.names = T), source)
#### PLANS ---------------------------------------------------------------------
## Load data ----
load_plan <- drake_plan(
raw_relevees = load_relevees(),
raw_soil = load_soil(),
flux_data = load_fluxes(),
full_try = load_try(),
gh_plants = load_gh_plants(),
gh_soil = load_gh_soil()
)
## Format field data ----
field_plan <- drake_plan(
cover_data = format_relevees(
raw_relevees = raw_relevees
),
trait_data = process_try(
cover_data = cover_data,
full_try = full_try
),
field_data = combine_field_data(
cover_data = cover_data,
trait_data = trait_data,
raw_soil = raw_soil
),
field_data_subset = subset_field_plants(
field_data = field_data
)
)
#### MAKE ----------------------------------------------------------------------
## Collate plans ----
weAreGo <- bind_rows(
load_plan,
field_plan
)
## Make ----
make(weAreGo)