https://github.com/QBioLab/CountmRNA.jl
Tip revision: 27fa41066bf09a3c1ca00fd333f72755e481b16f authored by H.F on 13 April 2021, 10:57:05 UTC
upload running script
upload running script
Tip revision: 27fa410
visualization0316.jl
using FileIO
using Images
field = [ "s3", "s8", "s14", "s15", "s20","s37", "s40"]
data_dir = "/datahub/rawdata/tandeng/mRNA_imaging/mRNA_confocal_hamamatsu-60X-TIRF/20200316";
output_dir = "$(data_dir)_visualization"
try
mkdir("$output_dir")
catch
end
function max_projection(pos)
println("Processing $pos")
raw_img = load(File(format"TIFF", "$data_dir/HE7-11-1-80uw-PWM_1_$pos.ome.tiff"));
img_size = size(raw_img);
img_max = zeros(N0f16, img_size[1], img_size[2], Int(img_size[3]/20));
for i in 1:Int(img_size[3]/20)
img_max[:, :, i] = maximum(raw_img[:, :, (i-1)*20+1:i*20], dims=3);
end
save("$output_dir/$pos.tiff", img_max);
end
for pos in field
max_projection(pos)
end