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Tip revision: 05217c4ed32e001e14eca2b9c32c8a21d363b8b3 authored by Alexey Sergushichev on 11 December 2018, 21:13:22 UTC
metadata update
Tip revision: 05217c4
getGSE.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/loadGEO.R
\name{getGSE}
\alias{getGSE}
\title{Load ExpressionSet from GEO Series}
\usage{
getGSE(name, destdir = tempdir(),
  mirrorPath = "https://ftp.ncbi.nlm.nih.gov")
}
\arguments{
\item{name}{String, containing GEO identifier of the dataset.
It should start with 'GSE' or 'GDS' and can include exact GPL
to annotate dataset, separated with dash ('-') from the identifier.}

\item{destdir}{Directory for caching loaded Series and GPL
files from GEO database.}

\item{mirrorPath}{URL string which specifies the source of matrices.}
}
\value{
List of ExpressionSet objects, that were available by given
    in \code{name} variable GEO identifier.
}
\description{
\code{getGSE} return the ExpressionSet object(s) corresponding
    to GEO Series Identifier.
}
\examples{
\dontrun{
    getGSE('GSE14308', destdir = 'cache')
    getGSE('GSE27112')
}
getGSE('GSE53986')

}
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