https://forge.inrae.fr/genotoul-bioinfo/mixKernel.git
Tip revision: 7f1e8cd86eeb79f831c144d6a5b681fbd303ba65 authored by Nathalie Vialaneix on 13 January 2022, 15:25:39 UTC
fixed a bug found during checks
fixed a bug found during checks
Tip revision: 7f1e8cd
NAMESPACE
import(mixOmics, ggplot2, reticulate)
importFrom("utils", "browseURL")
importFrom("methods", "is")
importFrom("graphics", "barplot")
importFrom("phyloseq", "otu_table", "phyloseq", "distance")
importFrom("vegan", "vegdist")
importFrom("corrplot", "corrplot")
importFrom("psych", "tr")
importFrom("stats", "reorder", "quantile", "median", "as.dist")
importFrom("quadprog", "solve.QP")
importFrom("LDRTools", "Pdist", "O2P")
importFrom("Matrix", "forceSymmetric")
export(
cim.kernel,
combine.kernels,
compute.kernel,
kernel.pca.permute,
kernel.pca,
mixKernel.users.guide,
plotVar.kernel.pca,
select.features,
center.scale
)
S3method(plot, kernel.pca)