Package: patchseqtools
Type: Package
Title: QC and Cell Type Mapping for Patch-Seq data
Version: 0.0.1
Author: Jeremy Miller <jeremym@alleninstitute.org>
Maintainer: Jeremy Miller <jeremym@alleninstitute.org>
Description: This repository includes code for QC mapping and cell type assignments. Specific topics include:
    1) Assigning quality scores to each cell (mostly wrapper functions for https://github.com/PavlidisLab/patchSeqQC)
    2) Cell type mapping using tree mapping strategy (to be added later) 
    3) Cell type clustering using CCA (mostly wrapper functions for https://satijalab.org/seurat/Seurat_AlignmentTutorial.html)
License: What license is it under?
Encoding: UTF-8
LazyData: true
Imports:
    dendextend (>= 1.7.0),
    gplots (>= 3.0.1),
    pdist (>= 1.2),
    matrixStats (>= 0.53.1),
    Rtsne (>= 0.13),
    ggplot2 (>= 2.2.1)
RoxygenNote: 6.1.0