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Package: patchseqtools Type: Package Title: QC and Cell Type Mapping for Patch-Seq data Version: 0.0.1 Author: Jeremy Miller <firstname.lastname@example.org> Maintainer: Jeremy Miller <email@example.com> Description: This repository includes code for QC mapping and cell type assignments. Specific topics include: 1) Assigning quality scores to each cell (mostly wrapper functions for https://github.com/PavlidisLab/patchSeqQC) 2) Cell type mapping using tree mapping strategy (to be added later) 3) Cell type clustering using CCA (mostly wrapper functions for https://satijalab.org/seurat/Seurat_AlignmentTutorial.html) License: What license is it under? Encoding: UTF-8 LazyData: true Imports: dendextend (>= 1.7.0), gplots (>= 3.0.1), pdist (>= 1.2), matrixStats (>= 0.53.1), Rtsne (>= 0.13), ggplot2 (>= 2.2.1) RoxygenNote: 6.1.0