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<div class="title">OxCalculatorT1Molli.h</div> </div>
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<a href="_ox_calculator_t1_molli_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> </div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="preprocessor">#ifndef Tomato_OXCALCULATORT1MOLLI_H</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor"></span><span class="preprocessor">#define Tomato_OXCALCULATORT1MOLLI_H</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include "<a class="code" href="_ox_calculator_8h.html">OxCalculator.h</a>"</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#include "tomatolib_export.h"</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> </div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="keyword">namespace </span>Ox {</div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> </div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span>  <span class="keyword">template</span>< <span class="keyword">typename</span> MeasureType ></div>
<div class="line"><a name="l00022"></a><span class="lineno"><a class="line" href="class_ox_1_1_calculator_t1_molli.html"> 22</a></span>  <span class="keyword">class </span><a class="code" href="class_ox_1_1_calculator_t1_molli.html">CalculatorT1Molli</a> : <span class="keyword">public</span> <a class="code" href="class_ox_1_1_calculator.html">Calculator</a><MeasureType> {</div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span>  <span class="keyword">public</span>:</div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> </div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="class_ox_1_1_calculator_t1_molli.html#a6f15bc9c026305248c927d62748903bf">calculate</a>();</div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  <span class="keyword">virtual</span> <span class="keywordtype">int</span> <a class="code" href="class_ox_1_1_calculator_t1_molli.html#a591ec9658fb5a3e4f48715057cf62b38">prepareToCalculate</a>();</div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> </div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  <span class="keyword">virtual</span> std::map <std::string, MeasureType> <a class="code" href="class_ox_1_1_calculator_t1_molli.html#ac275f14715caf983839e13f89a87e8d1">calculateMolli</a>(<span class="keywordtype">int</span> nSamples, <span class="keyword">const</span> MeasureType* invTimes, MeasureType* signal, MeasureType* signs);</div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> </div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  MeasureType <a class="code" href="class_ox_1_1_calculator_t1_molli.html#a9c9238dd8a96e06d3e0a96810377b90b">calculateR2AbsFromModel</a>(<span class="keywordtype">int</span> nSamples, <span class="keyword">const</span> MeasureType* invTimes, <span class="keyword">const</span> MeasureType* signal, <span class="keyword">const</span> MeasureType* parameters);</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> </div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  <span class="keywordtype">int</span> <a class="code" href="class_ox_1_1_calculator_t1_molli.html#a030582bca754a7b81febfae53fe0c10c">calculateCovarianceMatrix</a>(<span class="keyword">const</span> MeasureType* parameters, MeasureType *covarianceMatrix);</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span> </div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="keywordtype">int</span> <a class="code" href="class_ox_1_1_calculator_t1_molli.html#aec374fc512aa3b109138f0c16c53a171">calculateInvCovarianceMatrix</a>(<span class="keyword">const</span> MeasureType* invTimes, <span class="keyword">const</span> MeasureType* residuals, <span class="keyword">const</span> MeasureType* parameters, MeasureType *invCovarianceMatrix);</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span> </div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  <span class="keywordtype">bool</span> <a class="code" href="class_ox_1_1_calculator_t1_molli.html#a06d8579492ee063b129b489e638333be">getDoCalculateSDMap</a>() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span> </div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span> </div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  <span class="keyword">const</span> MeasureType * <a class="code" href="class_ox_1_1_calculator_t1_molli.html#af0ec071b9742038460f2987d24182030">getInvTimes</a>() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span> </div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  <span class="keywordtype">void</span> <a class="code" href="class_ox_1_1_calculator_t1_molli.html#a65a51dcadaafdefc576201de535f8810">setDoCalculateSDMap</a>(<span class="keywordtype">bool</span> _DoCalculateSDMap);</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span> </div>
<div class="line"><a name="l00098"></a><span class="lineno"><a class="line" href="class_ox_1_1_calculator_t1_molli.html#ab1892de078822ea106fcaebcf81047be"> 98</a></span>  <a class="code" href="class_ox_1_1_calculator_t1_molli.html#ab1892de078822ea106fcaebcf81047be">CalculatorT1Molli</a>() : <a class="code" href="class_ox_1_1_calculator.html">Calculator</a><MeasureType>(){</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  MaxTIForSignInvert = this->MAX_T1_TRESHOLD * 0.67;</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  _DoCalculateSDMap = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  }</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span> </div>
<div class="line"><a name="l00107"></a><span class="lineno"><a class="line" href="class_ox_1_1_calculator_t1_molli.html#a2a924ff09d446b51542dc246a6a04bd3"> 107</a></span>  <span class="keyword">virtual</span> <a class="code" href="class_ox_1_1_calculator.html">Calculator<MeasureType></a> *<a class="code" href="class_ox_1_1_calculator_t1_molli.html#a2a924ff09d446b51542dc246a6a04bd3">newByCloning</a>() { <span class="keywordflow">return</span> <span class="keyword">new</span> <a class="code" href="class_ox_1_1_calculator_t1_molli.html">CalculatorT1Molli<MeasureType></a>(*this); }</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> </div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span> </div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  <span class="keyword">const</span> <span class="keyword">static</span> <span class="keywordtype">int</span> MAX_T1_TRESHOLD = 4000;</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span> </div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  <span class="keywordtype">double</span> MaxTIForSignInvert;</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  <span class="keywordtype">bool</span> _DoCalculateSDMap;</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span> </div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  };</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span> </div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> } <span class="comment">//namespace Ox</span></div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span> </div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span> <span class="preprocessor">#ifndef TOMATOLIB_COMPILED</span></div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span> <span class="preprocessor"></span><span class="preprocessor">#include "<a class="code" href="_ox_calculator_t1_molli_8hxx.html">OxCalculatorT1Molli.hxx</a>"</span></div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span> <span class="preprocessor">#endif //TOMATOLIB_COMPILED</span></div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span> <span class="preprocessor">#endif //Tomato_OXCALCULATORT1MOLLI_H</span></div>
<div class="ttc" id="class_ox_1_1_calculator_t1_molli_html_a030582bca754a7b81febfae53fe0c10c"><div class="ttname"><a href="class_ox_1_1_calculator_t1_molli.html#a030582bca754a7b81febfae53fe0c10c">Ox::CalculatorT1Molli::calculateCovarianceMatrix</a></div><div class="ttdeci">int calculateCovarianceMatrix(const MeasureType *parameters, MeasureType *covarianceMatrix)</div><div class="ttdef"><b>Definition:</b> OxCalculatorT1Molli.hxx:228</div></div>
<div class="ttc" id="class_ox_1_1_calculator_t1_molli_html_a65a51dcadaafdefc576201de535f8810"><div class="ttname"><a href="class_ox_1_1_calculator_t1_molli.html#a65a51dcadaafdefc576201de535f8810">Ox::CalculatorT1Molli::setDoCalculateSDMap</a></div><div class="ttdeci">void setDoCalculateSDMap(bool _DoCalculateSDMap)</div><div class="ttdef"><b>Definition:</b> OxCalculatorT1Molli.hxx:342</div></div>
<div class="ttc" id="class_ox_1_1_calculator_t1_molli_html_ab1892de078822ea106fcaebcf81047be"><div class="ttname"><a href="class_ox_1_1_calculator_t1_molli.html#ab1892de078822ea106fcaebcf81047be">Ox::CalculatorT1Molli::CalculatorT1Molli</a></div><div class="ttdeci">CalculatorT1Molli()</div><div class="ttdef"><b>Definition:</b> OxCalculatorT1Molli.h:98</div></div>
<div class="ttc" id="_ox_calculator_8h_html"><div class="ttname"><a href="_ox_calculator_8h.html">OxCalculator.h</a></div></div>
<div class="ttc" id="class_ox_1_1_calculator_t1_molli_html_a06d8579492ee063b129b489e638333be"><div class="ttname"><a href="class_ox_1_1_calculator_t1_molli.html#a06d8579492ee063b129b489e638333be">Ox::CalculatorT1Molli::getDoCalculateSDMap</a></div><div class="ttdeci">bool getDoCalculateSDMap() const </div><div class="ttdef"><b>Definition:</b> OxCalculatorT1Molli.hxx:337</div></div>
<div class="ttc" id="class_ox_1_1_calculator_t1_molli_html_aec374fc512aa3b109138f0c16c53a171"><div class="ttname"><a href="class_ox_1_1_calculator_t1_molli.html#aec374fc512aa3b109138f0c16c53a171">Ox::CalculatorT1Molli::calculateInvCovarianceMatrix</a></div><div class="ttdeci">int calculateInvCovarianceMatrix(const MeasureType *invTimes, const MeasureType *residuals, const MeasureType *parameters, MeasureType *invCovarianceMatrix)</div><div class="ttdef"><b>Definition:</b> OxCalculatorT1Molli.hxx:257</div></div>
<div class="ttc" id="class_ox_1_1_calculator_t1_molli_html_a6f15bc9c026305248c927d62748903bf"><div class="ttname"><a href="class_ox_1_1_calculator_t1_molli.html#a6f15bc9c026305248c927d62748903bf">Ox::CalculatorT1Molli::calculate</a></div><div class="ttdeci">virtual int calculate()</div><div class="ttdef"><b>Definition:</b> OxCalculatorT1Molli.hxx:88</div></div>
<div class="ttc" id="class_ox_1_1_calculator_html"><div class="ttname"><a href="class_ox_1_1_calculator.html">Ox::Calculator</a></div><div class="ttdef"><b>Definition:</b> OxCalculator.h:28</div></div>
<div class="ttc" id="class_ox_1_1_calculator_t1_molli_html_ac275f14715caf983839e13f89a87e8d1"><div class="ttname"><a href="class_ox_1_1_calculator_t1_molli.html#ac275f14715caf983839e13f89a87e8d1">Ox::CalculatorT1Molli::calculateMolli</a></div><div class="ttdeci">virtual std::map< std::string, MeasureType > calculateMolli(int nSamples, const MeasureType *invTimes, MeasureType *signal, MeasureType *signs)</div><div class="ttdef"><b>Definition:</b> OxCalculatorT1Molli.hxx:113</div></div>
<div class="ttc" id="class_ox_1_1_calculator_t1_molli_html_af0ec071b9742038460f2987d24182030"><div class="ttname"><a href="class_ox_1_1_calculator_t1_molli.html#af0ec071b9742038460f2987d24182030">Ox::CalculatorT1Molli::getInvTimes</a></div><div class="ttdeci">const MeasureType * getInvTimes() const </div><div class="ttdef"><b>Definition:</b> OxCalculatorT1Molli.hxx:329</div></div>
<div class="ttc" id="_ox_calculator_t1_molli_8hxx_html"><div class="ttname"><a href="_ox_calculator_t1_molli_8hxx.html">OxCalculatorT1Molli.hxx</a></div></div>
<div class="ttc" id="class_ox_1_1_calculator_t1_molli_html_a9c9238dd8a96e06d3e0a96810377b90b"><div class="ttname"><a href="class_ox_1_1_calculator_t1_molli.html#a9c9238dd8a96e06d3e0a96810377b90b">Ox::CalculatorT1Molli::calculateR2AbsFromModel</a></div><div class="ttdeci">MeasureType calculateR2AbsFromModel(int nSamples, const MeasureType *invTimes, const MeasureType *signal, const MeasureType *parameters)</div><div class="ttdef"><b>Definition:</b> OxCalculatorT1Molli.hxx:206</div></div>
<div class="ttc" id="class_ox_1_1_calculator_t1_molli_html_a2a924ff09d446b51542dc246a6a04bd3"><div class="ttname"><a href="class_ox_1_1_calculator_t1_molli.html#a2a924ff09d446b51542dc246a6a04bd3">Ox::CalculatorT1Molli::newByCloning</a></div><div class="ttdeci">virtual Calculator< MeasureType > * newByCloning()</div><div class="ttdef"><b>Definition:</b> OxCalculatorT1Molli.h:107</div></div>
<div class="ttc" id="class_ox_1_1_calculator_t1_molli_html"><div class="ttname"><a href="class_ox_1_1_calculator_t1_molli.html">Ox::CalculatorT1Molli</a></div><div class="ttdef"><b>Definition:</b> OxCalculatorT1Molli.h:22</div></div>
<div class="ttc" id="class_ox_1_1_calculator_t1_molli_html_a591ec9658fb5a3e4f48715057cf62b38"><div class="ttname"><a href="class_ox_1_1_calculator_t1_molli.html#a591ec9658fb5a3e4f48715057cf62b38">Ox::CalculatorT1Molli::prepareToCalculate</a></div><div class="ttdeci">virtual int prepareToCalculate()</div><div class="ttdef"><b>Definition:</b> OxCalculatorT1Molli.hxx:15</div></div>
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