https://github.com/angeloschatzimparmpas/t-viSNE
Tip revision: 8d87bd631867563401ff5081b7f1acaf4644b7d4 authored by Angelos Chatzimparmpas on 28 April 2020, 16:32:50 UTC
new
new
Tip revision: 8d87bd6
index.html
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<body>
<div class="w3-container">
<div id="myModal" class="w3-modal">
<div class="w3-modal-content w3-card-4 w3-animate-zoom">
<header class="w3-container w3-blue">
<h3 style="display:inline-block; font-size: 16px; margin-top: 15px; margin-left: 10px; margin-bottom:15px">t-SNE Grid Search Resulting Diverse Projections</h3>
[Sorting Projections According to Metric:
<select id="param-SortMOver-view" name="param-SortMOver-view" style="color: black" onchange="ReSortOver()">
<option value="1" selected>Quality Metrics Average (QMA)</option>
<option value="2">Neighborhood Hit (NH)</option>
<option value="3">Trustworthiness (T)</option>
<option value="4">Continuity (C)</option>
<option value="5">Stress (S)</option>
<option value="6">Shepard Diagram Correlation (SDC)</option>
</select>
]
</header>
<div id="loader"></div>
<div id="gridVisual"></div>
<div class="w3-container w3-light-grey w3-padding">
<button id="confirmModal" class="w3-button w3-left w3-white w3-border" style="margin-top: -3px; margin-bottom: -3px" onclick="ReSort(true)" disabled>Confirm</button>
<button id="closeModal" class="w3-button w3-right w3-white w3-border" style="margin-top: -3px; margin-bottom: -3px" onclick="closeModalFun()">Close</button>
</div>
</div>
</div>
</div>
<div class="container-fluid">
<div class="row">
<div class="col-md-3">
<div class="panel panel-default" id="left-side-param">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block" data-toggle="tooltip" data-placement="right" title="Tip: control t-SNE algorithm and its parameters.">t-SNE Parameters</h2>
[Mode:
<select id="param-EX-view" name="param-EX-view" data-toggle="tooltip" data-placement="right" title="Tip: change between grid search and a single set of parameters." onchange="ExecuteMode()">
<option value="1" selected>Grid Search</option>
<option value="2">Single Set</option>
</select>
]
<div id="cost" style="display:inline-block; margin-top:3px; float:right"></div>
</div>
<div class="panel-body">
<div id="control-panel" data-sr="enter left over 8s">
<div class="param">
<label id="data" for="param-dataset" data-toggle="tooltip" data-placement="right" title="Tip: use one of the data sets already provided or upload a new file.">Data sets</label>
<select id="param-dataset" name="param-dataset" onChange="changeDataset(this.value);">
<option value="diabetes.csv" selected>Pima Indian Diabetes</option>
<option value="breast-cancer-wisconsin.csv">Breast Cancer Wisconsin</option>
<option value="iris.csv">Iris</option>
<option value="SPECTF.csv">SPECTF</option>
<option value="blobs.csv">Gaussian Clusters</option>
<option value="empty">Upload New File</option>
</select>
<button type="button" class="button" id="FactRes" onclick="FactoryReset()" data-toggle="tooltip" data-placement="right" title="Tip: Restart the entire web page/application.">Factory reset</button>
</div>
<div class="param">
<label for="param-perplexity" data-toggle="tooltip" data-placement="right" title="Tip: perplexity is a measure for information that is defined as 2 to the power of the Shannon entropy. The perplexity of a fair die with k sides is equal to k. In t-SNE, the perplexity may be viewed as a knob that sets the number of effective nearest neighbors. (Source: https://lvdmaaten.github.io/tsne/)">Perplexity</label>
<input id="param-perplexity" type="range" min="5" max="100" value="30", step="1" >
<output for="param-perplexity" id="param-perplexity-value">30</output>
</div>
<div class="param">
<label for="param-learningrate" data-toggle="tooltip" data-placement="right" title="Tip: if the learning rate is too high, the data may look like a ‘ball’ with any point approximately equidistant from its nearest neighbours. If the learning rate is too low, most points may look compressed in a dense cloud with few outliers. If the cost function gets stuck in a bad local minimum increasing the learning rate may help. (Source: https://scikit-learn.org/stable/modules/generated/sklearn.manifold.TSNE.html)">Learning rate</label>
<input id="param-learningrate" type="range" min="1" max="150" value="1", step="1">
<output for="param-learningrate" id="param-learningrate-value">1</output>
</div>
<div class="param">
<div class="row">
<div class="col-md-3">
<label for="param-maxiter" style="padding: 25px 0 0 8px" data-toggle="tooltip" data-placement="right" title="Tip: maximum number of iterations for the optimization. Should usually be around 250. (Source: https://scikit-learn.org/stable/modules/generated/sklearn.manifold.TSNE.html)">Max iterations</label>
</div>
<div class="col-md-4" style="padding: 25px 0 0 0px">
<input id="param-maxiter" type="range" min="10" max="1000" value="500", step="10" >
</div>
<div class="col-md-1">
<output for="param-maxiter" id="param-maxiter-value" style="padding: 25px 0 0 0" >500</output>
</div>
<div class="col-md-4">
<div id="hider2"></div>
<div id="PlotCost"></div>
</div>
</div>
</div>
<div class="param" style="margin-top: -10px">
<input id="file-input" type="file" name="name" style="display: none;" />
<button type="button" class="button" onclick='loadAnalysis();' style="padding:15px 12px 15px 12px; margin-left:15px" data-toggle="tooltip" data-placement="right" title="Tip: load previously executed file in .txt format.">Load execution</button>
<button type="button" class="button" onclick="SaveAnalysis()" style="padding:15px 12px 15px 12px; margin-left:20px" data-toggle="tooltip" data-placement="right" title="Tip: save/store previously executed file in .txt format.">Store execution</button>
<div class="col-md-" style="margin-top: 14px; margin-left:15px">
<label data-toggle="tooltip" data-placement="right" title="Tip: if you store distances the file size will be larger but on a loading of this execution it will be processed much quicker than without this option enabled.">
<input id="downloadDists" checked type="checkbox" >
Distances cached on "Store execution"
</label>
</div>
</div>
<div class="row">
<div class="col-md-12" style="margin-top:10px">
<p><div id="run-button"><button id="ExecuteBut" class="btn btn-primary btn-block" onclick="getData();" value="Execute new t-SNE analysis" style="margin-top: 4px"><i class="fas fa-running fa-lg" style="margin-right: 10px"></i>Execute new t-SNE analysis</button></div></p>
</div>
</div>
</div>
</div>
</div>
</div>
<div class="col-md-6">
<div class="panel panel-default med-bottomProv" style="margin-top:0.2px; margin-bottom:+14px">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block" data-toggle="tooltip" data-placement="right" title="Tip: a feature of this tool that supports clusters (and points) exploration. Checking the neighborhood preservation between the entire projection's average and a selection driven by the user.">Projections Provenance</h2>
<div id="textToChange" style="display:inline-block">[Sorting Projections According to Metric:</div>
<select id="param-SortM-view" name="param-SortM-view" onchange="ReSort(false)">
<option value="1" selected>Quality Metrics Average (QMA)</option>
<option value="2">Neighborhood Hit (NH)</option>
<option value="3">Trustworthiness (T)</option>
<option value="4">Continuity (C)</option>
<option value="5">Stress (S)</option>
<option value="6">Shepard Diagram Correlation (SDC)</option>
</select>
]
<div style="display:inline-block; float:right">
<button type="button" class="buttonOptimize" onclick='OptimizePoints();' style="padding: 5px 5px 5px 5px" data-toggle="tooltip" data-placement="right" title="Tip: find the best projections for the selected points">Optimize Selection</button>
</div>
</div>
<div class="panel-body">
<div id="ProjectionsVisual"></div>
<div id="ProjectionsMetrics"></div>
</div>
</div>
<svg id="SvgAnnotator"></svg>
<svg id="modtSNEcanvas_svg"></svg>
<svg id="modtSNEcanvas_svg_Schema"></svg>
<div id="modtSNEDiv">
<canvas id = "modtSNEcanvas" ></canvas>
</div>
</div>
<div class="col-md-2" style="width: 24.999999995%">
<div class="panel panel-default">
<div class="panel-heading">
<h2 class="panel-title" data-toggle="tooltip" data-placement="right" title="Tip: various functionalities depending on the user. These modes enable different interactions in the main visualization view.">Interaction Modes</h2>
</div>
<div class="panel-body">
<div id="resetAllFilters" style="margin-bottom: 20px">
<button class="btn btn-info active" onclick="setLayerProj();" style="margin-left: -1px !important" ><i class="fas fa-mouse-pointer fa-lg" data-toggle="tooltip" data-placement="right" title="Tip: in this mode the user can zoom in and out in the main visualization view and when hovering on a particular point he/she receives the exact data set's instance dimensions."></i>t-SNE Points Exploration</button>
<button class="btn btn-info" onclick="setLayerComp();" style="margin-left: -1.4px"><i class="far fa-object-group fa-lg" data-toggle="tooltip" data-placement="right" title="Tip: lasso selection in the main visualization view." ></i>Group Selection</button>
<button class="btn btn-info" onclick="setLayerSche();" style="margin-left: -2px !important"><i class="fas fa-draw-polygon fa-lg" data-toggle="tooltip" data-placement="right" title="Tip: draw a shape (polylines) and check the related dimensions correlations for your drawing/shape. With the left click you set one point and the right click you confirm the drawing for further analysis."></i>Dimension Correlation</button>
</div>
<button class="btn btn-info" onclick="setReset();" style="margin-left: 225px"><i class="fas fa-trash-alt fa-lg" style="margin-right: 10px" data-toggle="tooltip" data-placement="right" title="Tip: reset all filters applied in the visualizations without losing the execution."></i>Reset Filters</button>
</div>
</div>
</div>
</div>
<div class="row">
<div class="col-md-3" style="margin-top:-4px">
<div class="panel panel-default" style="padding-bottom: 35px;">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block" data-toggle="tooltip" data-placement="right" title="Tip: t-SNE overview with or without labels depending on each data set. To determine the feature of a data set that corresponds to classes set a * mark after this feature.">t-SNE Overview</h2><div id="datasetDetails"style="display:inline-block; float:right"></div>
</div>
<div class="row">
<div class="panel-body">
<div class="col-md-6">
<div id="overviewRect"></div>
</div>
<div class="col-md-6">
<div style="display:block" id="CategoryName"></div>
<div class="legend" id = "legend2"></div>
</div>
</div>
</div>
</div>
</div>
<div class="col-md-3 col-md-offset-6">
<div class="panel panel-default" style="margin-top: -200px">
<div class="panel-heading">
<h2 class="panel-title" data-toggle="tooltip" data-placement="right" title="Tip: in this panel the user can adapt the visual mappings of the main visualization view.">Visual Mapping</h2>
</div>
<div class="row">
<div class="panel-body">
<div class="col-md-12">
<div class="row">
<div class="col-md-8">
<div class="param" style="padding: 5px 0 5px 0">
<label for="male" data-toggle="tooltip" data-placement="right" title="Tip: density in the high-dimensional space taken from the t-SNE itself.">Density</label>
<select id="param-neighborHood" name ="param-neighborHood" onchange="setReInitialize(true);" style="display:inline-block;margin-left: 60px">
<option selected="selected" value="color">Color-encoding</option>
<option value="size">Size-encoding</option>
</select>
</div>
<div class="param" style="padding: 0px 0 0px 0" >
<output for="param-neighborHood" id="param-neighborHood-value " ></output>
<label for="male" data-toggle="tooltip" data-placement="right" title="Tip: remaining cost of each point throughout the entire projection.">Remaining cost</label>
<label id="selectionLabel" style="margin-top:4px; margin-left: 15px" data-toggle="tooltip" data-placement="right" title="Tip: change between size/radius and color encodings.">Size-encoding</label>
</div>
<div class="param" style="padding: 20px 0 5px 0; margin-top: 5px;" >
<label for="male" data-toggle="tooltip" data-placement="right" title="Tip: adapt the selection of points in the two-dimensional space: from a simple distance measurement between point and line to KNN algorithm, and vice versa.">Correlation measurement</label>
<select id="param-correlationMeasur" name ="param-correlationMeasur" onchange="setReInitializeDistanceCorrelation(true);" style="display:inline-block;margin-left: 32px">
<option selected="selected" value="1">Distance</option>
<option value="2">KNN</option>
</select>
</div>
<div class="param">
<div class="row" style="margin-top: 10px;">
<div class="col-md-6">
<label for="param-corr" id="param-corrLabel" data-toggle="tooltip" data-placement="right" title="Tip: percentage of all points taken into account by Dimension Correlation.">Correlation threshold (%)</label>
<label for="param-corr2" id="param-corrLabel2" data-toggle="tooltip" data-placement="right" style="display: none;">K-value (KNN)</label>
</div>
<div class="col-md-5">
<input id="param-corr" type="range" min="0" max="100" value="50", step="1" onchange="CalculateCorrel(true, 1);" style="margin-left: -20px;">
<input id="param-corr2" type="range" min="1" max="250" value="10", step="1" onchange="CalculateCorrel(true, 2);" style="margin-left: -20px; display: none">
</div>
<div class="col-md-1">
<output for="param-corr" id="param-corr-value" style="margin-left: -20px;">50</output>
<output for="param-corr2" id="param-corr-value2" style="margin-left: -20px; display: none">10</output>
</div>
</div>
</div>
<div class="param">
<div class="row" style="margin-top: 30px">
<div class="col-md-6">
<label for="param-lim" data-toggle="tooltip" data-placement="right" title="Tip: x*times the actual radius (increase/decrease points radius).">Points radius scaling</label>
</div>
<div class="col-md-5">
<input id="param-lim" type="range" min="1" max="4" value="3", step="0.5" onchange="setReInitialize(false);" style="margin-left: -20px;">
</div>
<div class="col-md-1">
<output for="param-lim" id="param-lim-value" style="margin-left: -20px;">3</output>
</div>
</div>
</div>
</div>
<div class="col-md-1">
<svg id="legend1" style = "margin-left: -30px"></svg>
</div>
<div class="col-md-2">
<svg id="legend4" style = "margin-left: -10px"></svg>
</div>
</div>
<div class="annotationAllClass" style="margin-top: 20px">
<label style="padding-bottom: 0px">
<input id="controls" type="checkbox" style="margin-top: 18px">
Hide annotations' controllers</input>
<button class="btn btn-default" onclick="BringBackAnnotations();" style="display:inline-block; float:right; margin-left:178px"><i class="fas fa-eye fa-lg" style="margin-right: 10px"></i>Reveal annotations</button>
</label>
<div id="param-correlation">
Annotation: <textarea type="text" id="comment" name="textforAnnotator" placeholder="Please, provide your comment."></textarea>
</div>
<div id="commBtn">
<div class="param" style="margin-top:10px">
<div id="toggleAnnotator" style= "margin-left: -120px"><button class="btn btn-default" onclick="setAnnotator();" style="display:inline-block; float:left; margin-left: 120px" ><i class="fas fa-comment fa-lg" style="margin-right: 10px"></i>Add annotation</button></div>
<div id="continue"></div><button class="btn btn-default active" onclick="setContinue();" style="display:inline-block; float:middle; margin-left: 6px"><i class="fas fa-chart-line fa-lg" style="margin-right: 10px"></i>Continue the analysis</button></div>
<button class="btn btn-default" onclick="deleteAnnotations();" style="display:inline-block; float:right; margin-top: -45px" ><i class="fas fa-comment-slash fa-lg" style="margin-right: 10px"></i>Delete annotations</button>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<div class="row">
<div class="col-md-3" style="margin-top:-4px">
<div class="panel panel-default" style="padding-bottom : 70px">
<div class="panel-heading">
<h2 class="panel-title" data-toggle="tooltip" data-placement="right" style="display:inline-block" title="Tip: a view related to the overall quality of the projection.">Shepard Heatmap</h2>
<div style="display:inline-block; float:right">
[Visualization:
<select id="param-SH-view" name="param-SH-view" onchange="ShepardHeatMap()">
<option value="1" selected>Shepard Heatmap</option>
<option value="2">Shepard Diagram</option>
</select>
]
</div>
</div>
<div class="panel-body">
<div class="row">
<div class="col-md-6">
<svg id="sheparheat"></svg>
</div>
<div class="col-md-2">
<svg id="legend3"></svg>
</div>
</div>
</div>
</div>
</div>
<div class="col-md-3 col-md-offset-6" style="margin-top: -2px">
<div class="panel panel-default right-side-cor">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block" data-toggle="tooltip" data-placement="right" title="Tip: user-driven shape investigation of the most correlated dimensions.">Dimension Correlation</h2><div class="param" style="display:inline-block; margin-top:-5px; float:right"><label for="param-corlim" style="display:inline-block; float: right" data-toggle="tooltip" data-placement="right" title="Tip: the minimum acceptable visible correlation. Default is 0, so the tool accepts all the correlations.">Min. Visible Correlation: #<output for="param-corlim" id="param-corlim-value" style="display:inline-block; float:right">0.0</output></label>
<input id="param-corlim" type="range" min="0" max="1" value="0.0", step="0.1" style="display:inline-block; float:right" onchange="CalculateCorrel(true);">
</div>
</div>
<div class="panel-body">
<svg id="correlation"></svg>
</div>
</div>
</div>
</div>
<div class="row">
<div class="col-md-3">
<div class="col-md-3" id="extra-information" style="width: 24.8vw">
<div class="panel panel-default right-side-hist">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block;" data-toggle="tooltip" data-placement="right" title="Tip: it might be useful to take a look at this histogram, to observe the density and remaining cost distributions, when remaining cost values are low and have an idea about the distributions.">Density and Remaining Cost Distributions</h2>
<div class="col-md-7"></div>
<div class="col-md-5">
<div class="param" style="display:inline-block; float:right; margin-top:-21.5px; margin-right: -18px">
<label for="param-costlim" style="display:inline-block; float: right" data-toggle="tooltip" data-placement="right" title="Tip: set the rate of the limiter for the minimum acceptable visible cost at the main visualization view.">Min. Visible Cost Rate: #<output for="param-costlim" id="param-costlim-value" style="display:inline-block; float:right">1</output></label>
<input id="param-costlim" type="range" min="0.1" max="1" value="1", step="0.1" style="display:inline-block; float:right" onchange="setReInitialize(false);">
</div>
</div>
</div>
<div class="panel-body">
<div id="costHist"></div>
</div>
</div>
</div>
</div>
<div class = col-md-6>
<div class="panel panel-default med-bottom" style="margin-top:+172px">
<div class="panel-heading">
<h2 class="panel-title" style="display:inline-block" data-toggle="tooltip" data-placement="right" title="Tip: a feature of this tool that supports clusters (and points) exploration. Checking the neighborhood preservation between the entire projection's average and a selection driven by the user.">Neighborhood Preservation </h2>
[Visualization:
<select id="param-NB-view" name="param-NB-view" onchange="LineBar()">
<option value="1" selected>Bar Chart</option>
<option value="2">Difference Bar Chart</option>
<option value="3">Line Plot</option>
<option value="4">Difference Line Plot</option>
</select>
]
<div id="knnBarChartDetails"style="display:inline-block; float:right">
</div>
</div>
<div class="panel-body">
<div id="hider"></div>
<div id="knnBarChart"></div>
</div>
</div>
</div>
<div class="col-md-3">
<div class="panel panel-default right-side-PCP">
<div class="panel-heading">
<h2 class="panel-title" data-toggle="tooltip" data-placement="right" title="Tip: for every selection the tool runs a local Principal Component Analysis (PCA) algorithm and dynamically adapts and shows the top 8 dimensions in an order from left to right. This sorting from left to right presents the most related (with high variance) features of the data set to the least important (low variance).">Adaptive Parallel Coordinates Plot</h2>
</div>
<div class="panel-body">
<div id="PCP" class="parcoords"></div>
</div>
</div>
</div>
</div>
</div>
<script>
// Tooltip
$(document).ready(function(){
$("[rel='tooltip']").tooltip();
});
$(document).ready(function(){
$("#ExecuteBut").click(function(){
var mode = document.getElementById('param-EX-view').value
mode = parseInt(mode)
if (mode == 1) {
$("#myModal").modal('show');
$('.modal-backdrop').removeClass("modal-backdrop");
}
});
});
function closeModalFun () {
$('#myModal').modal('hide');
}
$("#cost").html('(Unknown Overall Cost)');
$("#datasetDetails").html('(Unknown Number of Dimensions and Instances)');
$("#CategoryName").html('No Classification');
$("#knnBarChartDetails").html('(Number of Selected Points: 0/0)');
/* This script is used in order to give functionalities to the different buttons provide through the front-end. */
$('#param-lim').bind('input', function () { $('#param-lim-value').text($('#param-lim').val()); });
$('#param-corr').bind('input', function () { $('#param-corr-value').text($('#param-corr').val()); });
$('#param-corr2').bind('input', function () { $('#param-corr-value2').text($('#param-corr2').val()); });
$('#param-corlim').bind('input', function () { $('#param-corlim-value').text($('#param-corlim').val()); });
$('#param-costlim').bind('input', function () { $('#param-costlim-value').text($('#param-costlim').val()); });
$('#param-perplexity').bind('input', function () { $('#param-perplexity-value').text($('#param-perplexity').val()); });
$('#param-earlyexag').bind('input', function () { $('#param-earlyexag-value').text($('#param-earlyexag').val()); });
$('#param-learningrate').bind('input', function () { $('#param-learningrate-value').text($('#param-learningrate').val()); });
$('#param-maxiter').bind('input', function () { $('#param-maxiter-value').text($('#param-maxiter').val()); });
// Get the container element
var btnContainer = document.getElementById("commBtn"); //Add a new comment button
// Get all buttons with class="btn" inside the container
var btns = btnContainer.getElementsByClassName("btn");
for (var i = 0; i < btns.length; i++) {
btns[i].addEventListener("click", function() {
let current = document.getElementById("commBtn").getElementsByClassName("active");
current[0].className = current[0].className.replace("btn btn-default active", "btn btn-default");
this.className += " active";
});
}
// Get the container element
var btnContainer2 = document.getElementById("resetAllFilters"); //resetAllFilters button
// Get all buttons with class="btn" inside the container
var btns2 = btnContainer2.getElementsByClassName("btn");
for (var i = 0; i < btns2.length; i++) {
btns2[i].addEventListener("click", function() {
let current = document.getElementsByClassName("active");
current[0].className = current[0].className.replace("btn btn-info active", "btn btn-info");
this.className += " active";
});
}
</script>
<script>
/* On resize refresh the shepardHeatmap */
window.onresize = function(event) {
if ( document.getElementById('cost').hasChildNodes() ) {
// Clear legend for the shepardHeatmap
//var svgLegend = d3.select("#legend3");
//svgLegend.selectAll("*").remove();
// Clear the SheapHeardmap before refreshing
//var svg = d3.select("#sheparheat");
//svg.selectAll("*").remove();
// Call the ShepardHeatmap again to be redrawn
//ShepardHeatMap();
MainVisual();
}
}
/* When the user clicks on the button,
toggle between hiding and showing the dropdown content */
function myFunction() {
document.getElementById("myDropdown").classList.toggle("show");
}
// Close the dropdown menu if the user clicks outside of it
window.onclick = function(event) {
if (!event.target.matches('.dropbtn')) {
var dropdowns = document.getElementsByClassName("dropdown-content");
var i;
for (i = 0; i < dropdowns.length; i++) {
var openDropdown = dropdowns[i];
if (openDropdown.classList.contains('show')) {
openDropdown.classList.remove('show');
}
}
}
}
</script>
<!-- Load the core visualization script. -->
<script src="./js/tsne_vis.js"></script>
</body>
</html>