https://github.com/jhmarcus/feems-analysis
Tip revision: f2d7330f25f8a11124db09000918ae38ae00d4a7 authored by Joseph Marcus on 16 May 2021, 23:59:23 UTC
made C larger in supp fig 13
made C larger in supp fig 13
Tip revision: f2d7330
environment.yml
name: feems_analysis_e
channels:
- r
- defaults
- conda-forge
- bioconda
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.0=anacondar_1
- admixture=1.3.0=0
- alabaster=0.7.12=py_0
- argon2-cffi=20.1.0=py38h25fe258_2
- async_generator=1.10=py_0
- attrs=20.3.0=pyhd3deb0d_0
- babel=2.9.0=pyhd3deb0d_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- binutils_impl_linux-64=2.31.1=h6176602_1
- binutils_linux-64=2.31.1=h6176602_9
- bleach=3.3.0=pyh44b312d_0
- brotlipy=0.7.0=py38h8df0ef7_1001
- bwidget=1.9.11=1
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.17.1=h27cfd23_0
- ca-certificates=2021.4.13=h06a4308_1
- cairo=1.14.12=h8948797_3
- cartopy=0.18.0=py38hc1e57b6_5
- certifi=2020.12.5=py38h06a4308_0
- cffi=1.14.5=py38h261ae71_0
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- cryptography=3.2.1=py38h7699a38_0
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- decorator=5.0.7=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- docutils=0.17.1=py38h578d9bd_0
- entrypoints=0.3=pyhd8ed1ab_1003
- expat=2.2.9=he1b5a44_2
- fontconfig=2.13.0=h9420a91_0
- freetype=2.10.4=h7ca028e_0
- fribidi=1.0.10=h7b6447c_0
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_9
- geos=3.8.1=he1b5a44_0
- gfortran_impl_linux-64=7.3.0=hdf63c60_1
- gfortran_linux-64=7.3.0=h553295d_9
- glib=2.68.1=h36276a3_0
- graphite2=1.3.14=h23475e2_0
- gsl=2.4=h14c3975_4
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=h28cd5cc_2
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_9
- harfbuzz=2.8.0=h6f93f22_0
- icu=58.2=hf484d3e_1000
- idna=2.10=pyh9f0ad1d_0
- imagesize=1.2.0=py_0
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- ipykernel=5.5.3=py38hd0cf306_0
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- ipython_genutils=0.2.0=py_1
- ipywidgets=7.6.3=pyhd3deb0d_0
- jedi=0.18.0=py38h578d9bd_2
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- jpeg=9d=h36c2ea0_0
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- jupyterlab_server=1.2.0=py_0
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- krb5=1.17.2=h926e7f8_0
- ld_impl_linux-64=2.33.1=h53a641e_7
- libblas=3.9.0=8_openblas
- libcblas=3.9.0=8_openblas
- libcurl=7.76.1=hc4aaa36_1
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- libiconv=1.16=h516909a_0
- liblapack=3.9.0=8_openblas
- libnghttp2=1.43.0=h812cca2_0
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- libpng=1.6.37=h21135ba_2
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- libssh2=1.9.0=hab1572f_5
- libstdcxx-ng=9.3.0=h6de172a_19
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- libuuid=1.0.3=h1bed415_2
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.9=h13577e0_2
- lz4-c=1.9.2=he1b5a44_3
- make=4.2.1=h1bed415_1
- markupsafe=1.1.1=py38h8df0ef7_2
- metis=5.1.0=h58526e2_1006
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- openssl=1.1.1k=h27cfd23_0
- packaging=20.9=pyh44b312d_0
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- pyshp=2.1.3=pyh44b312d_0
- pysocks=1.7.1=py38h578d9bd_3
- python=3.8.3=hcff3b4d_2
- python-dateutil=2.8.1=py_0
- python_abi=3.8=1_cp38
- pytz=2021.1=pyhd8ed1ab_0
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- qt=5.9.7=h5867ecd_1
- qtconsole=5.0.3=pyhd8ed1ab_0
- qtpy=1.9.0=py_0
- r-askpass=1.0=r36h14c3975_0
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- r-bh=1.69.0_1=r36h6115d3f_0
- r-broom=0.5.2=r36h6115d3f_0
- r-callr=3.2.0=r36h6115d3f_0
- r-cellranger=1.1.0=r36h6115d3f_0
- r-cli=1.1.0=r36h6115d3f_0
- r-clipr=0.6.0=r36h6115d3f_0
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- r-colorspace=1.4_1=r36h96ca727_0
- r-crayon=1.3.4=r36h6115d3f_0
- r-curl=3.3=r36h96ca727_0
- r-dbi=1.0.0=r36h6115d3f_0
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- r-forcats=0.4.0=r36h6115d3f_0
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- r-memoise=1.1.0=r36h6115d3f_0
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- r-mime=0.6=r36h96ca727_0
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- r-nlme=3.1_139=r36ha65eedd_0
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- r-viridislite=0.3.0=r36h6115d3f_0
- r-whisker=0.3_2=r36h6115d3f_4
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- readline=8.1=h27cfd23_0
- requests=2.25.1=pyhd3deb0d_0
- rpy2=3.4.3=py38r36hb5d20a5_0
- scikit-sparse=0.4.4=py38h956cf04_1004
- send2trash=1.5.0=py_0
- shapely=1.7.1=py38h2765ab7_1
- simplegeneric=0.8.1=py38_2
- sip=4.19.13=py38he6710b0_0
- six=1.15.0=pyh9f0ad1d_0
- snowballstemmer=2.1.0=pyhd8ed1ab_0
- sphinx=3.1.2=py_0
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- sphinxcontrib-jsmath=1.0.1=py_0
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- sqlite=3.35.4=hdfb4753_0
- suitesparse=5.7.2=h717dc36_0
- tbb=2020.2=hc9558a2_0
- terminado=0.9.4=py38h578d9bd_0
- testpath=0.4.4=py_0
- tk=8.6.10=hbc83047_0
- tktable=2.10=h14c3975_0
- tornado=6.1=py38h25fe258_0
- traitlets=5.0.5=py_0
- tzlocal=2.1=py38_0
- urllib3=1.26.4=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- wheel=0.36.2=pyhd3eb1b0_0
- widgetsnbextension=3.5.1=py38h578d9bd_4
- xorg-libxau=1.0.9=h14c3975_0
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- xz=5.2.5=h7b6447c_0
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- zipp=3.4.1=pyhd8ed1ab_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.5=h6597ccf_2
- pip:
- amply==0.1.4
- appdirs==1.4.4
- click==7.1.2
- click-plugins==1.1.1
- cligj==0.7.1
- cloudpickle==1.6.0
- configargparse==1.4
- cycler==0.10.0
- dask==2021.4.0
- datrie==0.8.2
- deprecated==1.2.12
- feems==1.0.0
- filelock==3.0.12
- fiona==1.8.13.post1
- flake8==3.8.3
- fsspec==2021.4.0
- gitdb==4.0.7
- gitpython==3.1.14
- joblib==1.0.1
- kiwisolver==1.3.1
- locket==0.2.1
- matplotlib==3.2.2
- mccabe==0.6.1
- more-itertools==8.7.0
- msprime==1.0.0
- munch==2.5.0
- networkx==2.4
- newick==1.1.0
- numpy==1.18.5
- pandas==1.2.4
- pandas-plink==2.0.4
- partd==1.2.0
- pep8==1.7.1
- pluggy==0.13.1
- psutil==5.8.0
- pulp==2.4
- py==1.10.0
- pyaml==20.4.0
- pycodestyle==2.6.0
- pyflakes==2.2.0
- pyproj==2.6.1.post1
- pytest==5.4.3
- pyyaml==5.4.1
- ratelimiter==1.2.0.post0
- scikit-learn==0.23.1
- scipy==1.5.0
- setuptools==49.1.0
- smart-open==5.0.0
- smmap==4.0.0
- snakemake==6.1.1
- svgwrite==1.4.1
- threadpoolctl==2.1.0
- toolz==0.11.1
- toposort==1.6
- tqdm==4.60.0
- tskit==0.3.5
- wrapt==1.12.1
- xarray==0.17.0
- xlrd==2.0.1
- zstandard==0.15.2
prefix: /project2/jnovembre/jhmarcus/src/miniconda3/envs/feems_analysis_e