.runThisTest <- Sys.getenv("RunAllbayestestRTests") == "yes" if (.runThisTest && require("brms") && require("testthat") && require("insight") && require("httr")) { test_that("brms", { skip_on_cran() set.seed(333) model <- insight::download_model("brms_mixed_1") expect_s3_class(hdi(model), "data.frame") expect_s3_class(ci(model), "data.frame") expect_s3_class(rope(model, verbose = FALSE), "data.frame") # expect_true("equivalence_test" %in% class(equivalence_test(model))) expect_s3_class(map_estimate(model), "data.frame") expect_s3_class(p_map(model), "data.frame") expect_s3_class(p_direction(model), "data.frame") expect_equal(colnames(hdi(model)), c("Parameter", "CI", "CI_low", "CI_high", "Effects", "Component")) expect_equal(colnames(hdi(model, effects = "all")), c("Parameter", "CI", "CI_low", "CI_high", "Effects", "Component")) # expect_equal(nrow(equivalence_test(model)), 2) out <- describe_posterior(model, effects = "all", components = "all", centrality = "mean") suppressWarnings( s <- summary(model) ) expect_identical(colnames(out), c( "Parameter", "Effects", "Mean", "CI", "CI_low", "CI_high", "pd", "ROPE_CI", "ROPE_low", "ROPE_high", "ROPE_Percentage", "Rhat", "ESS" )) expect_equal(as.vector(s$fixed[, 1, drop = TRUE]), out$Mean[1:2], tolerance = 1e-3) expect_equal(as.vector(s$fixed[, 5, drop = TRUE]), out$Rhat[1:2], tolerance = 1e-1) expect_equal(as.vector(s$random$cyl[, 1, drop = TRUE]), out$Mean[12], tolerance = 1e-3) expect_equal(as.vector(s$random$gear[, 1, drop = TRUE]), out$Mean[13:15], tolerance = 1e-3) }) test_that("brms", { # skip_on_travis() skip_on_cran() set.seed(333) model <- insight::download_model("brms_1") out <- describe_posterior(model, effects = "all", components = "all", centrality = "mean") s <- summary(model) expect_identical(colnames(out), c( "Parameter", "Mean", "CI", "CI_low", "CI_high", "pd", "ROPE_CI", "ROPE_low", "ROPE_high", "ROPE_Percentage", "Rhat", "ESS" )) expect_equal(as.vector(s$fixed[, 1, drop = TRUE]), out$Mean[1:3], tolerance = 1e-3) expect_equal(as.vector(s$fixed[, 5, drop = TRUE]), out$Rhat[1:3], tolerance = 1e-1) }) test_that("brms", { # skip_on_travis() skip_on_cran() set.seed(333) model <- insight::download_model("brms_mv_2") out <- describe_posterior(model, effects = "all", components = "all", centrality = "mean", test = NULL) s <- summary(model) expect_identical(colnames(out), c( "Parameter", "Effects", "Mean", "CI", "CI_low", "CI_high", "Rhat", "ESS" )) expect_equal(as.vector(s$fixed[, 1, drop = TRUE]), out$Mean[c(1, 11, 2:5, 12:14)], tolerance = 1e-3) expect_equal(as.vector(s$fixed[, 5, drop = TRUE]), out$Rhat[c(1, 11, 2:5, 12:14)], tolerance = 1e-1) }) test_that("brms", { skip_on_cran() set.seed(333) model <- insight::download_model("brms_2") out <- describe_posterior(model, effects = "all", components = "all", centrality = "mean", test = NULL) s <- summary(model) expect_equal(as.vector(s$fixed[, 1, drop = TRUE]), out$Mean, tolerance = 1e-3) expect_equal(as.vector(s$fixed[, 5, drop = TRUE]), out$Rhat, tolerance = 1e-1) }) }