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To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

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swh:1:cnt:bcc4919d007da927a94af03a137a63242be2669a
Citations

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

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Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
#' Constructs data frame with gene annotations and submits it into Shiny GAM web-server
#' @param es Expression set object
#' @return URL for Shiny GAM
#' @importFrom utils write.table
shinyGAMAnalysis <- function(es) {
    de <- fData(es)

    deFile <- tempfile()
    write.table(de, deFile, sep="\t", row.names=FALSE, col.names=TRUE)

    # :ToDo: deal with bad certificates and remove ssl_verifypeer option
    r <- httr::POST(url="https://artyomovlab.wustl.edu/upload",
               body=readBin(deFile, what="raw", n=20e6),
               httr::config(ssl_verifypeer = FALSE))
    httr::stop_for_status(r)
    key <- httr::content(r, as="text", encoding="UTF-8")

    shinyGAMUrl <- sprintf("https://artyomovlab.wustl.edu/shiny/gam/?geneDE_key=%s", key)
    return(jsonlite::toJSON(shinyGAMUrl))
}

Software Heritage — Copyright (C) 2015–2025, The Software Heritage developers. License: GNU AGPLv3+.
The source code of Software Heritage itself is available on our development forge.
The source code files archived by Software Heritage are available under their own copyright and licenses.
Terms of use: Archive access, API— Contact— JavaScript license information— Web API

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