<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
xmlns:pom="http://maven.apache.org/POM/4.0.0">
<modelVersion>4.0.0</modelVersion>
<groupId>com.nrps.norine</groupId>
<artifactId>norine</artifactId>
<packaging>war</packaging>
<version>0.0.1-SNAPSHOT</version>
<name>norine</name>
<url>http://bioinfo.lifl.fr/norine</url>
<description>norine project</description>
<dependencies>
<dependency>
<groupId>nl</groupId>
<artifactId>nl</artifactId>
<version>1.2.1</version>
<scope>system</scope>
<systemPath>${basedir}/src/main/webapp/WEB-INF/lib/simplecaptcha-1.2.1.jar</systemPath>
</dependency>
<!-- Junit -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.8.2</version>
<scope>test</scope>
</dependency>
<!-- Struts 2, passage de 2.2.1 à 2.3.20, 2.5.10.1 -->
<dependency>
<groupId>org.apache.struts</groupId>
<artifactId>struts2-core</artifactId>
<version>2.5.10.1</version>
</dependency>
<dependency>
<groupId>org.apache.struts</groupId>
<artifactId>struts2-sitemesh-plugin</artifactId>
<version>2.5.10.1</version>
</dependency>
<dependency>
<groupId>org.apache.struts</groupId>
<artifactId>struts2-spring-plugin</artifactId>
<version>2.5.10.1</version>
</dependency>
<dependency>
<groupId>javassist</groupId>
<artifactId>javassist</artifactId>
<version>3.12.1.GA</version>
</dependency>
<!-- Servlet & Jsp -->
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
<version>2.4</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>jsp-api</artifactId>
<version>2.0</version>
<scope>provided</scope>
</dependency>
<!-- for jsf 2.2 on tomcat 6 -->
<!--dependency>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
<version>3.0</version>
<scope>system</scope>
<systemPath>/home/afl/opt/apache-tomcat-7.0.47/lib/servlet-api.jar</systemPath>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>jsp-api</artifactId>
<version>2.2</version>
<scope>system</scope>
<systemPath>/home/afl/opt/apache-tomcat-7.0.47/lib/jsp-api.jar</systemPath>
</dependency-->
<!--standard.jar -->
<dependency>
<groupId>taglibs</groupId>
<artifactId>standard</artifactId>
<version>1.1.2</version>
</dependency>
<!-- JSTL -->
<!--dependency>
<groupId>javax.servlet</groupId>
<artifactId>jstl</artifactId>
<version>1.1.2</version>
<scope>provided</scope>
</dependency -->
<dependency>
<groupId>jstl</groupId>
<artifactId>jstl</artifactId>
<version>1.2</version>
</dependency>
<!-- Jakarta Commons -->
<dependency>
<groupId>commons-fileupload</groupId>
<artifactId>commons-fileupload</artifactId>
<version>1.3</version><!-- 1.1.1 -->
</dependency>
<!-- Dwr -->
<dependency>
<groupId>uk.ltd.getahead</groupId>
<artifactId>dwr</artifactId>
<version>1.1-beta-3</version>
</dependency>
<!-- openpojo for testing beans -->
<dependency>
<groupId>com.googlecode.openpojo</groupId>
<artifactId>openpojo</artifactId>
<version>0.3.4</version>
<scope>test</scope>
</dependency>
<!--dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-all</artifactId>
<version>1.8.5</version>
<scope>test</scope>
</dependency-->
<!--dependency>
<groupId>com.sun.jndi</groupId>
<artifactId>providerutil</artifactId>
<version>1.2</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.sun.jndi</groupId>
<artifactId>fscontext</artifactId>
<version>1.2-beta-3</version>
<scope>test</scope>
</dependency-->
<dependency>
<groupId>commons-dbcp</groupId>
<artifactId>commons-dbcp</artifactId>
<version>1.4</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>postgresql</groupId>
<artifactId>postgresql</artifactId>
<version>8.4-701.jdbc3</version>
</dependency>
<!-- Passage à une version supérieure du driver jdbc suite upgrade server postgres -->
<!-- https://mvnrepository.com/artifact/postgresql/postgresql -->
<!-- dependency>
<groupId>postgresql</groupId>
<artifactId>postgresql</artifactId>
<version>9.1-901-1.jdbc4</version>
</dependency-->
<dependency>
<groupId>hsqldb</groupId>
<artifactId>hsqldb</artifactId>
<version>1.8.0.7</version>
<scope>test</scope>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.logging.log4j/log4j-core -->
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-core</artifactId>
<version>2.11.0</version>
</dependency>
<dependency>
<groupId>com.googlecode.json-simple</groupId>
<artifactId>json-simple</artifactId>
<version>1.1</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-email</artifactId>
<version>1.2</version>
</dependency>
<!-- jersey/jackson, etc -->
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-server</artifactId>
<version>1.17.1</version>
</dependency>
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-client</artifactId>
<version>1.17.1</version>
</dependency>
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-json</artifactId>
<version>1.17.1</version>
</dependency>
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-servlet</artifactId>
<version>1.17.1</version>
</dependency>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-core-asl</artifactId>
<version>1.9.2</version>
</dependency>
<dependency>
<groupId>javax.ws.rs</groupId>
<artifactId>jsr311-api</artifactId>
<version>1.1.1</version>
</dependency>
<!-- JSF Apache MyFaces -->
<!--dependency>
<groupId>org.apache.myfaces.core</groupId>
<artifactId>myfaces-api</artifactId>
<version>2.1.5</version>
</dependency>
<dependency>
<groupId>org.apache.myfaces.core</groupId>
<artifactId>myfaces-impl</artifactId>
<version>2.1.5</version>
</dependency-->
<!-- Tomcat 6 need this -->
<dependency>
<groupId>com.sun.el</groupId>
<artifactId>el-ri</artifactId>
<version>1.0</version>
</dependency>
<!-- JSF Sun Mojarra -->
<dependency>
<groupId>com.sun.faces</groupId>
<artifactId>jsf-impl</artifactId>
<version>2.1.29</version>
</dependency>
<dependency>
<groupId>com.sun.faces</groupId>
<artifactId>jsf-api</artifactId>
<version>2.1.29</version>
</dependency>
<!-- Tomahawk -->
<dependency>
<groupId>org.apache.myfaces.tomahawk</groupId>
<artifactId>tomahawk20</artifactId>
<version>1.1.14</version>
</dependency>
<!-- needed ? -->
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>1.2</version>
</dependency>
<!-- JAXB EclipseLink Moxy -->
<dependency>
<groupId>org.eclipse.persistence</groupId>
<artifactId>org.eclipse.persistence.moxy</artifactId>
<version>2.5.1</version>
</dependency>
<!-- Apache Http client -->
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient</artifactId>
<version>4.3.1</version>
</dependency>
<!-- Smiles2Monomers -->
<dependency>
<groupId>s2m</groupId>
<artifactId>s2m</artifactId>
<scope>system</scope>
<version>1.0</version>
<systemPath>${basedir}/src/main/webapp/WEB-INF/lib/s2m.jar</systemPath>
</dependency>
<dependency>
<groupId>cdk</groupId>
<artifactId>cdk</artifactId>
<scope>system</scope>
<version>1.0</version>
<systemPath>${basedir}/src/main/webapp/WEB-INF/lib/cdk-1.4.19.jar</systemPath>
</dependency>
<!-- Libraire Java de cryptage Jasypt -->
<dependency>
<groupId>org.jasypt</groupId>
<artifactId>jasypt</artifactId>
<version>1.9.2</version>
</dependency>
<!-- mzjava library for the calculation of the monoisotopic mass of compounds -->
<!-- ne fonctionne pas -->
<!--dependency>
<groupId>org.expasy.mzjava</groupId>
<artifactId>mzjava-proteomics</artifactId>
<version>1.1.1-SNAPSHOT</version>
</dependency-->
<dependency>
<groupId>org.expasy.mzjava</groupId>
<artifactId>mzjava-core</artifactId>
<scope>system</scope>
<version>1.1.0</version>
<systemPath>${basedir}/src/main/webapp/WEB-INF/lib/mzjava-core-1.1.0.jar</systemPath>
</dependency>
<dependency>
<groupId>org.expasy.mzjava</groupId>
<artifactId>mzjava-proteomics</artifactId>
<scope>system</scope>
<version>1.1.0</version>
<systemPath>${basedir}/src/main/webapp/WEB-INF/lib/mzjava-proteomics-1.1.0.jar</systemPath>
</dependency>
<!-- https://mvnrepository.com/artifact/com.google.guava/guava -->
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>15.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/net.sf.trove4j/trove4j -->
<dependency>
<groupId>net.sf.trove4j</groupId>
<artifactId>trove4j</artifactId>
<version>3.0.3</version>
</dependency>
<!-- Struts2 JUnit -->
<!--dependency>
<groupId>org.apache.struts</groupId>
<artifactId>struts2-junit-plugin</artifactId>
<version>2.5.10.1</version>
</dependency-->
<!-- nécessaire pour version JDK >= 8! -->
<!--dependency>
<groupId>javax.json</groupId>
<artifactId>javax.json-api</artifactId>
<version>1.1</version>
</dependency>
<dependency>
<groupId>org.glassfish</groupId>
<artifactId>javax.json</artifactId>
<version>1.1</version>
</dependency-->
<!-- JAXB JXC compiler -->
<!-- https://mvnrepository.com/artifact/org.glassfish.jaxb/jaxb-jxc -->
<dependency>
<groupId>org.glassfish.jaxb</groupId>
<artifactId>jaxb-jxc</artifactId>
<version>2.3.2</version>
</dependency>
<!-- Maven JAXB plugin -->
<!-- https://mvnrepository.com/artifact/org.codehaus.mojo/jaxb2-maven-plugin -->
<!--dependency>
<groupId>org.codehaus.mojo</groupId>
<artifactId>jaxb2-maven-plugin</artifactId>
<version>2.4</version>
</dependency-->
</dependencies>
<build>
<finalName>norine</finalName>
<plugins>
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.8.0</version>
<configuration>
<source>1.7</source>
<target>1.7</target>
</configuration>
</plugin>
<!-- Tomcat 7 plugin -->
<plugin>
<groupId>org.apache.tomcat.maven</groupId>
<artifactId>tomcat7-maven-plugin</artifactId>
<version>2.2</version>
<configuration>
<path>/norine</path>
<update>true</update>
<url>http://localhost:8080/manager/text</url>
<username>tomcat</username>
<password>tomcat</password>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.tomcat.maven</groupId>
<artifactId>tomcat6-maven-plugin</artifactId>
<version>2.2</version>
<configuration>
<path>/norine</path>
<update>true</update>
<url>http://localhost:8080/manager</url>
<username>tomcat</username>
<password>tomcat</password>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.8</version>
</plugin>
<!--plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>jaxb2-maven-plugin</artifactId>
<version>2.3.1</version>
<executions>
<execution>
<id>xjc</id>
<goals>
<goal>xjc</goal>
</goals>
</execution>
</executions>
<configuration>
<packageName>com.nrps.doi.generated</packageName>
</configuration>
</plugin-->
</plugins>
</build>
</project>
