<?xml version="1.0" encoding="UTF-8"?>

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
	xmlns:pom="http://maven.apache.org/POM/4.0.0">
	<modelVersion>4.0.0</modelVersion>
	<groupId>com.nrps.norine</groupId>
	<artifactId>norine</artifactId>
	<packaging>war</packaging>
	<version>0.0.1-SNAPSHOT</version>
	<name>norine</name>
	<url>http://bioinfo.lifl.fr/norine</url>
	<description>norine project</description>

	<dependencies>

		<dependency>
			<groupId>nl</groupId>
			<artifactId>nl</artifactId>
			<version>1.2.1</version>
			<scope>system</scope>
			<systemPath>${basedir}/src/main/webapp/WEB-INF/lib/simplecaptcha-1.2.1.jar</systemPath>
		</dependency>


		<!-- Junit -->
		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>
			<version>4.8.2</version>
			<scope>test</scope>
		</dependency>

		<!-- Struts 2, passage de 2.2.1 à 2.3.20, 2.5.10.1 -->
		<dependency>
		    <groupId>org.apache.struts</groupId>
		    <artifactId>struts2-core</artifactId>
		    <version>2.5.10.1</version>
		</dependency>
		<dependency>
		    <groupId>org.apache.struts</groupId>
		    <artifactId>struts2-sitemesh-plugin</artifactId>
		    <version>2.5.10.1</version>
		</dependency>
		<dependency>
		    <groupId>org.apache.struts</groupId>
		    <artifactId>struts2-spring-plugin</artifactId>
		    <version>2.5.10.1</version>
		</dependency>
		<dependency>
			<groupId>javassist</groupId>
			<artifactId>javassist</artifactId>
			<version>3.12.1.GA</version>
		</dependency>

		<!-- Servlet & Jsp -->
		<dependency>
			<groupId>javax.servlet</groupId>
			<artifactId>servlet-api</artifactId>
			<version>2.4</version>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>javax.servlet</groupId>
			<artifactId>jsp-api</artifactId>
			<version>2.0</version>
			<scope>provided</scope>
		</dependency>


		<!-- for jsf 2.2 on tomcat 6 -->
		<!--dependency>
			<groupId>javax.servlet</groupId>
			<artifactId>servlet-api</artifactId> 
			<version>3.0</version>
			<scope>system</scope>
			<systemPath>/home/afl/opt/apache-tomcat-7.0.47/lib/servlet-api.jar</systemPath> 
		</dependency>
		<dependency>
			<groupId>javax.servlet</groupId>
			<artifactId>jsp-api</artifactId> 
			<version>2.2</version>
			<scope>system</scope>
			<systemPath>/home/afl/opt/apache-tomcat-7.0.47/lib/jsp-api.jar</systemPath> 
		</dependency-->

		<!--standard.jar -->
		<dependency>
			<groupId>taglibs</groupId>
			<artifactId>standard</artifactId>
			<version>1.1.2</version>
		</dependency>

		<!-- JSTL -->
		<!--dependency>
			<groupId>javax.servlet</groupId>
			<artifactId>jstl</artifactId> 
			<version>1.1.2</version>
			<scope>provided</scope>
		</dependency -->
		<dependency>
			<groupId>jstl</groupId>
			<artifactId>jstl</artifactId>
			<version>1.2</version>
		</dependency>



		<!-- Jakarta Commons -->
		<dependency>
			<groupId>commons-fileupload</groupId>
			<artifactId>commons-fileupload</artifactId>
			<version>1.3</version><!-- 1.1.1 -->
		</dependency>

		<!-- Dwr -->
		<dependency>
			<groupId>uk.ltd.getahead</groupId>
			<artifactId>dwr</artifactId>
			<version>1.1-beta-3</version>
		</dependency>

		<!-- openpojo for testing beans -->
		<dependency>
			<groupId>com.googlecode.openpojo</groupId>
			<artifactId>openpojo</artifactId>
			<version>0.3.4</version>
			<scope>test</scope>
		</dependency>

		<!--dependency>
			<groupId>org.mockito</groupId>
			<artifactId>mockito-all</artifactId>
			<version>1.8.5</version>
			<scope>test</scope>
		</dependency-->

		<!--dependency>
			<groupId>com.sun.jndi</groupId>
			<artifactId>providerutil</artifactId>
			<version>1.2</version>
			<scope>test</scope>
		</dependency>


		<dependency>
			<groupId>com.sun.jndi</groupId>
			<artifactId>fscontext</artifactId>
			<version>1.2-beta-3</version>
			<scope>test</scope>
		</dependency-->

		<dependency>
			<groupId>commons-dbcp</groupId>
			<artifactId>commons-dbcp</artifactId>
			<version>1.4</version>
			<scope>test</scope>
		</dependency>

		<dependency>
			<groupId>postgresql</groupId>
			<artifactId>postgresql</artifactId>
			<version>8.4-701.jdbc3</version>
		</dependency>
		<!-- Passage à une version supérieure du driver jdbc suite upgrade server postgres -->
		<!-- https://mvnrepository.com/artifact/postgresql/postgresql -->
		<!-- dependency>
		    <groupId>postgresql</groupId>
		    <artifactId>postgresql</artifactId>
		    <version>9.1-901-1.jdbc4</version>
		</dependency-->

		

		<dependency>
			<groupId>hsqldb</groupId>
			<artifactId>hsqldb</artifactId>
			<version>1.8.0.7</version>
			<scope>test</scope>
		</dependency>

		<!-- https://mvnrepository.com/artifact/org.apache.logging.log4j/log4j-core -->
		<dependency>
		    <groupId>org.apache.logging.log4j</groupId>
		    <artifactId>log4j-core</artifactId>
		    <version>2.11.0</version>
		</dependency>


		<dependency>
			<groupId>com.googlecode.json-simple</groupId>
			<artifactId>json-simple</artifactId>
			<version>1.1</version>
		</dependency>

		<dependency>
			<groupId>org.apache.commons</groupId>
			<artifactId>commons-email</artifactId>
			<version>1.2</version>
		</dependency>


		<!-- jersey/jackson, etc -->
		<dependency>
			<groupId>com.sun.jersey</groupId>
			<artifactId>jersey-server</artifactId>
			<version>1.17.1</version>
		</dependency>
		<dependency>
			<groupId>com.sun.jersey</groupId>
			<artifactId>jersey-client</artifactId>
			<version>1.17.1</version>
		</dependency>
		<dependency>
			<groupId>com.sun.jersey</groupId>
			<artifactId>jersey-json</artifactId>
			<version>1.17.1</version>
		</dependency>
		<dependency>
			<groupId>com.sun.jersey</groupId>
			<artifactId>jersey-servlet</artifactId>
			<version>1.17.1</version>
		</dependency>

		<dependency>
			<groupId>org.codehaus.jackson</groupId>
			<artifactId>jackson-core-asl</artifactId>
			<version>1.9.2</version>
		</dependency>
		<dependency>
			<groupId>javax.ws.rs</groupId>
			<artifactId>jsr311-api</artifactId>
			<version>1.1.1</version>
		</dependency>


		<!-- JSF Apache MyFaces -->

		<!--dependency>
			<groupId>org.apache.myfaces.core</groupId>
			<artifactId>myfaces-api</artifactId>
			<version>2.1.5</version>
		</dependency>
		<dependency>
			<groupId>org.apache.myfaces.core</groupId>
			<artifactId>myfaces-impl</artifactId>
			<version>2.1.5</version>
		</dependency-->

		<!-- Tomcat 6 need this -->
		<dependency>
			<groupId>com.sun.el</groupId>
			<artifactId>el-ri</artifactId>
			<version>1.0</version>
		</dependency>

		<!-- JSF Sun Mojarra -->

		<dependency>
			<groupId>com.sun.faces</groupId>
			<artifactId>jsf-impl</artifactId>
			<version>2.1.29</version>
		</dependency>
		<dependency>
			<groupId>com.sun.faces</groupId>
			<artifactId>jsf-api</artifactId>
			<version>2.1.29</version>
		</dependency>



		<!-- Tomahawk -->
		<dependency>
			<groupId>org.apache.myfaces.tomahawk</groupId>
			<artifactId>tomahawk20</artifactId>
			<version>1.1.14</version>
		</dependency>



		<!-- needed ? -->
		<dependency>
			<groupId>commons-io</groupId>
			<artifactId>commons-io</artifactId>
			<version>1.2</version>
		</dependency>

		<!-- JAXB EclipseLink Moxy -->
		<dependency>
			<groupId>org.eclipse.persistence</groupId>
			<artifactId>org.eclipse.persistence.moxy</artifactId>
			<version>2.5.1</version>
		</dependency>

		<!-- Apache Http client -->
		<dependency>
			<groupId>org.apache.httpcomponents</groupId>
			<artifactId>httpclient</artifactId>
			<version>4.3.1</version>
		</dependency>

		<!-- Smiles2Monomers -->
		<dependency>
			<groupId>s2m</groupId>
			<artifactId>s2m</artifactId>
			<scope>system</scope>
			<version>1.0</version>
			<systemPath>${basedir}/src/main/webapp/WEB-INF/lib/s2m.jar</systemPath>
		</dependency>
		<dependency>
			<groupId>cdk</groupId>
			<artifactId>cdk</artifactId>
			<scope>system</scope>
			<version>1.0</version>
			<systemPath>${basedir}/src/main/webapp/WEB-INF/lib/cdk-1.4.19.jar</systemPath>
		</dependency>

		<!-- Libraire Java de cryptage Jasypt -->
		<dependency>
			<groupId>org.jasypt</groupId>
			<artifactId>jasypt</artifactId>
			<version>1.9.2</version>
		</dependency>
		
		<!-- mzjava library for the calculation of the monoisotopic mass of compounds -->
		<!-- ne fonctionne pas -->
		<!--dependency>
			<groupId>org.expasy.mzjava</groupId>
			<artifactId>mzjava-proteomics</artifactId>
			<version>1.1.1-SNAPSHOT</version>
		</dependency-->
		<dependency>
			<groupId>org.expasy.mzjava</groupId>
			<artifactId>mzjava-core</artifactId>
			<scope>system</scope>
			<version>1.1.0</version>
			<systemPath>${basedir}/src/main/webapp/WEB-INF/lib/mzjava-core-1.1.0.jar</systemPath>
		</dependency>
		<dependency>
			<groupId>org.expasy.mzjava</groupId>
			<artifactId>mzjava-proteomics</artifactId>
			<scope>system</scope>
			<version>1.1.0</version>
			<systemPath>${basedir}/src/main/webapp/WEB-INF/lib/mzjava-proteomics-1.1.0.jar</systemPath>
		</dependency>
		<!-- https://mvnrepository.com/artifact/com.google.guava/guava -->
		<dependency>
		    <groupId>com.google.guava</groupId>
		    <artifactId>guava</artifactId>
		    <version>15.0</version>
		</dependency>

		<!-- https://mvnrepository.com/artifact/net.sf.trove4j/trove4j -->
		<dependency>
		    <groupId>net.sf.trove4j</groupId>
		    <artifactId>trove4j</artifactId>
		    <version>3.0.3</version>
		</dependency>
		
		<!-- Struts2 JUnit -->
		<!--dependency>
		    <groupId>org.apache.struts</groupId>
		    <artifactId>struts2-junit-plugin</artifactId>
		    <version>2.5.10.1</version>
		</dependency-->
		
		<!-- nécessaire pour version JDK >= 8! -->
		<!--dependency>
		    <groupId>javax.json</groupId>
		    <artifactId>javax.json-api</artifactId>
		    <version>1.1</version>
		</dependency>
		
		<dependency>
		    <groupId>org.glassfish</groupId>
		    <artifactId>javax.json</artifactId>
		    <version>1.1</version>
		</dependency-->
		
		<!-- JAXB JXC compiler -->
		<!-- https://mvnrepository.com/artifact/org.glassfish.jaxb/jaxb-jxc -->
		<dependency>
		    <groupId>org.glassfish.jaxb</groupId>
		    <artifactId>jaxb-jxc</artifactId>
		    <version>2.3.2</version>
		</dependency>
		
		<!-- Maven JAXB plugin -->
		<!-- https://mvnrepository.com/artifact/org.codehaus.mojo/jaxb2-maven-plugin -->
		<!--dependency>
		    <groupId>org.codehaus.mojo</groupId>
		    <artifactId>jaxb2-maven-plugin</artifactId>
		    <version>2.4</version>
		</dependency-->

	</dependencies>

	<build>
		<finalName>norine</finalName>
		<plugins>
			<plugin>
				<artifactId>maven-compiler-plugin</artifactId>
				<version>3.8.0</version>
				<configuration>
					<source>1.7</source>
					<target>1.7</target>
				</configuration>
			</plugin>


			<!-- Tomcat 7 plugin -->
			<plugin>
				<groupId>org.apache.tomcat.maven</groupId>
				<artifactId>tomcat7-maven-plugin</artifactId>
				<version>2.2</version>
				<configuration>
					<path>/norine</path>
					<update>true</update>
					<url>http://localhost:8080/manager/text</url>
					<username>tomcat</username>
					<password>tomcat</password>
				</configuration>
			</plugin>

			<plugin>
				<groupId>org.apache.tomcat.maven</groupId>
				<artifactId>tomcat6-maven-plugin</artifactId>
				<version>2.2</version>
				<configuration>
					<path>/norine</path>
					<update>true</update>
					<url>http://localhost:8080/manager</url>
					<username>tomcat</username>
					<password>tomcat</password>
				</configuration>
			</plugin>
			
			<plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-surefire-plugin</artifactId>
                    <version>2.8</version>
            </plugin>
            
            <!--plugin>
	            <groupId>org.codehaus.mojo</groupId>
	            <artifactId>jaxb2-maven-plugin</artifactId>
	            <version>2.3.1</version>
	            <executions>
	                <execution>
	                    <id>xjc</id>
	                    <goals>
	                        <goal>xjc</goal>
	                    </goals>
	                </execution>
	            </executions>
	            <configuration>
	                <packageName>com.nrps.doi.generated</packageName>
	            </configuration>
        	</plugin-->
			

		</plugins>
	</build>

</project>