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Tip revision: d5d3a2a453d193538955965af54d20d0c8b9f72c authored by Alexey Sergushichev on 02 February 2019, 13:32:57 UTC
version bump + fixes for biocheck warnings
Tip revision: d5d3a2a
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/gseaPlot.R
\title{Returns path to an svg file with enrichment plot}
gseaPlot(es, rankBy, selectedGenes, width, height, vertical = FALSE,
  addHeatmap = FALSE, showAnnotation = NULL, annotationColors = NULL,
  pallete = c("blue", "white", "red"))
\item{es}{ExpressionSet object.}

\item{rankBy}{name of the numeric column used for gene ranking}

\item{selectedGenes}{indexes of selected genes (starting from one, in the order of fData)}

\item{width}{width of the image (in inches)}

\item{height}{height of the image (in inches)}

\item{vertical}{whether to use vertical orientation (default: FALSE)}

\item{addHeatmap}{whether to add an expression heatmap, sorted by rankBy (default: FALSE)}

\item{showAnnotation}{a name of column annotation to add to the heatmap, default: NULL (no annotation)}

\item{annotationColors}{a list of colors to use in annotation}

\item{pallete}{a vector of colors to draw heatmap}
path to an svg file
Returns path to an svg file with enrichment plot
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