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Tip revision: 0af0aaff407791d423e10282390f812aea47cb41 authored by Vladislav Kamenev on 11 April 2019, 08:40:35 UTC
Appveyor release bioc and fgsea from git master
Tip revision: 0af0aaf
gseaPlot.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/gseaPlot.R
\name{gseaPlot}
\alias{gseaPlot}
\title{Returns path to an svg file with enrichment plot}
\usage{
gseaPlot(es, rankBy, selectedGenes, width, height, vertical = FALSE,
  addHeatmap = FALSE, showAnnotation = NULL, annotationColors = NULL,
  pallete = c("blue", "white", "red"))
}
\arguments{
\item{es}{ExpressionSet object.}

\item{rankBy}{name of the numeric column used for gene ranking}

\item{selectedGenes}{indexes of selected genes (starting from one, in the order of fData)}

\item{width}{width of the image (in inches)}

\item{height}{height of the image (in inches)}

\item{vertical}{whether to use vertical orientation (default: FALSE)}

\item{addHeatmap}{whether to add an expression heatmap, sorted by rankBy (default: FALSE)}

\item{showAnnotation}{a name of column annotation to add to the heatmap, default: NULL (no annotation)}

\item{annotationColors}{a list of colors to use in annotation}

\item{pallete}{a vector of colors to draw heatmap}
}
\value{
path to an svg file
}
\description{
Returns path to an svg file with enrichment plot
}
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