https://bitbucket.org/valenlab/guide-seq-pold3
Tip revision: ea73a563ebb6e6679709edeed4ba0cd077b4eece authored by JokingHero on 06 January 2022, 13:45:22 UTC
link to the paper
link to the paper
Tip revision: ea73a56
GUIDE-seq library (-, antisense).gb
LOCUS Exported 187 bp ds-DNA linear UNA 30-JUN-2020
DEFINITION natural linear DNA
ACCESSION .
VERSION .
KEYWORDS .
SOURCE natural DNA sequence
ORGANISM unspecified
REFERENCE 1 (bases 1 to 187)
AUTHORS Haapaniemi lab
TITLE Direct Submission
JOURNAL Exported Thursday, Oct 15, 2020 from SnapGene 5.1.7
https://www.snapgene.com
FEATURES Location/Qualifiers
source 1..187
/organism="unspecified"
/mol_type="genomic DNA"
misc_feature 1..65
/label=P7 Adapters
misc_feature 25..32
/label=Read-1 Index (Barcode)
primer_bind complement(33..66)
/label=Index-1 (custom)
primer_bind 33..66
/label=Read-2 (custom)
misc_feature 44..93
/label=Nuclease_off_-_GSP2
gap 95..109
/label=insert
/estimated_length=15
misc_feature complement(110..187)
/label=Miseq Y Adapter
primer_bind complement(110..142)
/label=PE Read 1 Sequencing Primer (standard)
primer_bind 110..142
/label=Index-2 (standard)
primer_bind 111..122
/label=Miseq common Adapter
/note="NOTE:actually sequence is 5'-[Phos]GATC GAGA
GC*C*A-3' the last *C*A is not complementary to the ""Miseq
Y Adapter"" to avoid elongation !!!Just used for ligation
!!!"
misc_feature 143..150
/label=custom UMI
misc_feature 151..158
/label=Read-2 Index (Barcode)
misc_feature complement(159..187)
/label=P5_2
misc_feature complement(162..187)
/label=P5_1
ORIGIN
1 caagcagaag acggcatacg agatbbbbbb bbgtgactgg agtcctctct atgggcagtc
61 ggtgatttga gttgtcatat gttaataacg gtatnnnnnn nnnnnnnnna gatcggaaga
121 gcgtcgtgta gggaaagagt gtnnwnnwnn bbbbbbbbgt gtagatctcg gtggtcgccg
181 tatcatt
//