https://github.com/DaehwanKimLab/hisat2
Tip revision: 1ec47602507e7237ab85603255b7cfa954763a66 authored by Daehwan Kim on 21 December 2020, 20:05:41 UTC
Update hisat3n.md
Update hisat3n.md
Tip revision: 1ec4760
aligner_report.h
/*
* Copyright 2011, Ben Langmead <langmea@cs.jhu.edu>
*
* This file is part of Bowtie 2.
*
* Bowtie 2 is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* Bowtie 2 is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Bowtie 2. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef ALIGNER_REPORT_H_
#define ALIGNER_REPORT_H_
#include "aligner_cache.h"
class Reporter {
public:
/**
*
*/
bool report(const AlignmentCacheIface<uint32_t>& cache, const QVal<uint32_t>& qv) {
return true; // don't retry
}
};
#endif /*ALIGNER_REPORT_H_*/