https://github.com/vsbuffalo/paradox_variation
Tip revision: 8fa6b5834f6536319b1e5cd9722ca02d317183df authored by Vince Buffalo on 12 August 2021, 01:04:21 UTC
updated ms
updated ms
Tip revision: 8fa6b58
species_notes.txt
## 1st Check Notes
In addition to the manual terrestriality / alphas in `species_range_fixes.r`,
here are some notes:
- Lates calcarifer is catadromous, but I've listed it as terrestrial.
- Oncorhynchus is anadramous and are listed as terrestrial
- Sciaenops ocellatus -- TODO
- Strongylocentrotus purpuratus -- CHECK
Most Drosophilids are wrong.
## 2nd Check Notes
- With default alpha, Nasonia vitripennis had an inferred area of 24079 km^2.
This is far smaller than this indicates:
http://www.sas.rochester.edu/bio/labs/WerrenLab/WerrenLab-NasoniaDistribution.html
and https://www.nature.com/articles/hdy2009160 This species is broadly
cosmopolitan but occurrences are low in the GBIF data. As a conservative
estimate, I added the areas of US and Central Europe.
## Manually Assigned ranges
- Caenorhabditis -- this one's hard. Looking [this
map](https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201500053?), and
[this article](https://elifesciences.org/articles/05849), it seems a
conservative range estimate is North America and Europe for C. elegans. It
seems C. elegans hasn't been found in Asia, South America, or Africa.
## Marked as Missing
I marked some inferred ranges as missing, as the number off occurrences was too
low to make a quality range estimate. These are generally microorganisms often
not logged.
- Chlamydomonas
- Plasmodium
- Neurospora
- Phytophthora